RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 A0A1W2PRS3 328 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 PINLYPA6NC86 204 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 WASHC1A8K0Z3 465 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 SYCE1LA8MT33 242 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 KIR3DP1A8MWS1 328 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 C19orf84I3L1E1 186 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 PRRG2O14669 202 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 ADAM10O14672 748 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 FGF17O60258 216 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 URI1O94763 535 aaPredicted RBP9.49□□□□□ -0.89
LDLR-214ENST00000560628 ETHE1O95571 254 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 TUBB4AP04350 444 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 GFAPP14136 432 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 COX6B1P14854 86 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 TNFRSF8P28908 595 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 PTGS2P35354 604 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 SOX3P41225 446 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 RAP1GDS1P52306 607 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 HK2P52789 917 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 RPS13P62277 151 aaKnown RBP9.49□□□□□ -0.89
LDLR-214ENST00000560628 RNF4P78317 190 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 PLGLB1Q02325 96 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 SERTAD2Q14140 314 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 E2F2Q14209 437 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 FAM83EQ2M2I3 478 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 CMPK2Q5EBM0 449 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 C18orf63Q68DL7 685 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 GRHL2Q6ISB3 625 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 C8orf74Q6P047 294 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 ZNF572Q7Z3I7 529 aaPredicted RBP9.49□□□□□ -0.89
LDLR-214ENST00000560628 ZFP62Q8NB50 900 aaPredicted RBP9.49□□□□□ -0.89
LDLR-214ENST00000560628 OR52N2Q8NGI0 321 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 OR14A16Q8NHC5 309 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 C16orf52Q8NHV5 167 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 SLC2A12Q8TD20 617 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 UBTD2Q8WUN7 234 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 RGMAQ96B86 450 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 RASL10BQ96S79 203 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 VPS11Q9H270 941 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 RUBCNLQ9H714 662 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 CHST11Q9NPF2 352 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 DEPPQ9NTK1 212 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 CPSF2Q9P2I0 782 aaKnown RBP9.49□□□□□ -0.89
LDLR-214ENST00000560628 HRH3Q9Y5N1 445 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 SPACA6W5XKT8 324 aa9.49□□□□□ -0.89
LDLR-214ENST00000560628 FAM166BA8MTA8 275 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ZNF354AO60765 605 aaPredicted RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 PRKRAO75569 313 aaKnown RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 SIX3O95343 332 aaPredicted RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 CLDN14O95500 239 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 TPOP07202 933 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 TYK2P29597 1187 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 SERPINB1P30740 379 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 KIR3DL1P43629 444 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 PIK3CGP48736 1102 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 NEK2P51955 445 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 PPIAP62937 165 aaKnown RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 CKAP4Q07065 602 aaKnown RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 PCDH1Q08174 1060 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 SETDB1Q15047 1291 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ACAP2Q15057 778 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 CPSF6Q16630 551 aaKnown RBP eCLIP9.48□□□□□ -0.89
LDLR-214ENST00000560628 DGAT2L6Q6ZPD8 337 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 CEP128Q6ZU80 1094 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 GPR180Q86V85 440 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 PLD6Q8N2A8 252 aaKnown RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 PSD4Q8NDX1 1056 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 OR2M7Q8NG81 312 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 RHEBL1Q8TAI7 183 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 FAM57AQ8TBR7 257 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ZNF721Q8TF20 911 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 UCN3Q969E3 161 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 MTFMTQ96DP5 389 aaKnown RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 SENP5Q96HI0 755 aaPredicted RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 SCYL1Q96KG9 808 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 GPR78Q96P69 363 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 DGAT2Q96PD7 388 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 RPF2Q9H7B2 306 aaKnown RBP9.48□□□□□ -0.89
LDLR-214ENST00000560628 IPPKQ9H8X2 491 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ACTR8Q9H981 624 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 DMRT3Q9NQL9 472 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ZNF358Q9NW07 568 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 NINJ2Q9NZG7 142 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ADGRE2Q9UHX3 823 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 PPT2Q9UMR5 302 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 RNF11Q9Y3C5 154 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ATG4BQ9Y4P1 393 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 CELSR2Q9HCU4 2923 aa9.48□□□□□ -0.89
LDLR-214ENST00000560628 ITPR2Q14571 2701 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 CRYBG3Q68DQ2 2970 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 SYNDIG1LA6NDD5 238 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 GLOD5A6NK44 160 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 ENO4A6NNW6 628 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 E9PLN8 166 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 HRKO00198 91 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 PLPP1O14494 284 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 EEDO75530 441 aaKnown RBP9.47□□□□□ -0.89
LDLR-214ENST00000560628 SCELO95171 688 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 KLHL2O95198 593 aa9.47□□□□□ -0.89
LDLR-214ENST00000560628 ALDOAP04075 364 aaKnown RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms