RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 TLX1P31314 330 aaPredicted RBP20.36■□□□□ 0.85
SNX1-206ENST00000559389 SLC13A2Q13183 592 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 NSDHLQ15738 373 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 OR52E8Q6IFG1 317 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 MAVSQ7Z434 540 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 ANKRD37Q7Z713 158 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 WDR75Q8IWA0 830 aaKnown RBP20.36■□□□□ 0.85
SNX1-206ENST00000559389 C16orf78Q8WTQ4 265 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 METTL21AQ8WXB1 218 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 C8orf44Q96CB5 159 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 TM4SF18Q96CE8 201 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 CRELD1Q96HD1 420 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 PTCHD1Q96NR3 888 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 CATSPER2Q96P56 530 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 P4HTMQ9NXG6 502 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 C19orf25Q9UFG5 118 aaPredicted RBP20.36■□□□□ 0.85
SNX1-206ENST00000559389 TCRBV16S1A1N1A0A5B0 115 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 SDHDO14521 159 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 CTNSO60931 367 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 IL3P08700 152 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 SDC1P18827 310 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 TAS2R50P59544 299 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 GUCY1A3Q02108 690 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 C6orf136Q5SQH8 315 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 CLNKQ7Z7G1 428 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 LRRC34Q8IZ02 419 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 MMP21Q8N119 569 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 OR11G2Q8NGC1 345 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 FAIM2Q9BWQ8 316 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 PRORYQ9H606 182 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 CCDC134Q9H6E4 229 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 MYNNQ9NPC7 610 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 FBXL4Q9UKA2 621 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 PCDHA9Q9Y5H5 950 aa20.35■□□□□ 0.85
SNX1-206ENST00000559389 MAP1BP46821 2468 aaKnown RBP20.35■□□□□ 0.85
SNX1-206ENST00000559389 C1orf226A1L170 272 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 SYNDIG1LA6NDD5 238 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 GLOD5A6NK44 160 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 TRPC5OSA6NMA1 111 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 TCP11X1B4DZS4 312 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 PEX12O00623 359 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 ZNF195O14628 629 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 FGF17O60258 216 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 EDF1O60869 148 aaKnown RBP20.34■□□□□ 0.85
SNX1-206ENST00000559389 LDB3O75112 727 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 VPS4BO75351 444 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 COX6A1P12074 109 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 PPP2R1BP30154 601 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 IGLV3-21P80748 117 aaPredicted RBP20.34■□□□□ 0.85
SNX1-206ENST00000559389 EEF1A2Q05639 463 aaKnown RBP20.34■□□□□ 0.85
SNX1-206ENST00000559389 RIPOR1Q6ZS17 1223 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 FNDC5Q8NAU1 212 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.34■□□□□ 0.85
SNX1-206ENST00000559389 TANKQ92844 425 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 UCN3Q969E3 161 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 ANKRD9Q96BM1 317 aaPredicted RBP20.34■□□□□ 0.85
SNX1-206ENST00000559389 VPS50Q96JG6 964 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 AKTIPQ9H8T0 292 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 MAN2B2Q9Y2E5 1009 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 USH1CQ9Y6N9 552 aa20.34■□□□□ 0.85
SNX1-206ENST00000559389 IGHV1-45A0A0A0MS14 117 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 ALOX15P16050 662 aaPredicted RBP20.33■□□□□ 0.85
SNX1-206ENST00000559389 TACR1P25103 407 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 MAPK1P28482 360 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 MDH1P40925 334 aaKnown RBP20.33■□□□□ 0.85
SNX1-206ENST00000559389 FOLH1Q04609 750 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 PCOLCEQ15113 449 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 SMU1Q2TAY7 513 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 VWA5B1Q5TIE3 1220 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 SLC48A1Q6P1K1 146 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 IKBIPQ70UQ0 350 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 CPEB2Q7Z5Q1 589 aaKnown RBP20.33■□□□□ 0.85
SNX1-206ENST00000559389 DNAJB14Q8TBM8 379 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 MAELQ96JY0 434 aaKnown RBP20.33■□□□□ 0.85
SNX1-206ENST00000559389 C1orf50Q9BV19 199 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 ZNF700Q9H0M5 742 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 ASIC5Q9NY37 505 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 HEY2Q9UBP5 337 aa20.33■□□□□ 0.85
SNX1-206ENST00000559389 PGRMC2O15173 223 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 HPP00738 406 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 BCKDHAP12694 445 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 DRD2P14416 443 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 OR4D2P58180 307 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 ERVK-8P63133 956 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 ID2Q02363 134 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 MAD2L1Q13257 205 aaPredicted RBP20.32■□□□□ 0.84
SNX1-206ENST00000559389 SERTAD2Q14140 314 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 HEPACAMQ14CZ8 416 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 COL28A1Q2UY09 1125 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 DEFB109BQ30KR1 87 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 SFT2D3Q587I9 215 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 FAM71E1Q6IPT2 247 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 C19orf48Q6RUI8 117 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 LARP4Q71RC2 724 aaKnown RBP eCLIP20.32■□□□□ 0.84
SNX1-206ENST00000559389 CDC26Q8NHZ8 85 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 WDR77Q9BQA1 342 aaPredicted RBP20.32■□□□□ 0.84
SNX1-206ENST00000559389 CES1P1Q9UKY3 287 aa20.32■□□□□ 0.84
SNX1-206ENST00000559389 WBP11Q9Y2W2 641 aaKnown RBP20.32■□□□□ 0.84
SNX1-206ENST00000559389 TPRP12270 2363 aaKnown RBP20.32■□□□□ 0.84
SNX1-206ENST00000559389 PTPRQQ9UMZ3 2332 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms