RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IGHG3P01860 377 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 HSP90AB1P08238 724 aaKnown RBP2.86□□□□□ -1.95
VPS13C-208ENST00000559119 ALOX5P09917 674 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 SPP1P10451 314 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 ERCC2P18074 760 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 MSNP26038 577 aaKnown RBP2.86□□□□□ -1.95
VPS13C-208ENST00000559119 NDST1P52848 882 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 EIF5P55010 431 aaKnown RBP2.86□□□□□ -1.95
VPS13C-208ENST00000559119 IRX3P78415 501 aaPredicted RBP2.86□□□□□ -1.95
VPS13C-208ENST00000559119 PAX2Q02962 417 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 MZT1Q08AG7 82 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 ERMARDQ5T6L9 678 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 BTNL8Q6UX41 500 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 PCGF5Q86SE9 256 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 CREBRFQ8IUR6 639 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 PI4KAP1Q8N8J0 262 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 OR13C5Q8NGS8 318 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 VN1R17PQ8TDU5 208 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 RNF138Q8WVD3 245 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 KATNB1Q9BVA0 655 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 HES7Q9BYE0 225 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 MTIF3Q9H2K0 278 aaKnown RBP2.86□□□□□ -1.95
VPS13C-208ENST00000559119 NT5DC2Q9H857 520 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 CHMP5Q9NZZ3 219 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 SWAP70Q9UH65 585 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 RNF24Q9Y225 148 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 KLK4Q9Y5K2 254 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 PASKQ96RG2 1323 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 DHX29Q7Z478 1369 aaKnown RBP2.86□□□□□ -1.95
VPS13C-208ENST00000559119 KIAA1107Q9UPP5 1409 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 PLEKHH2Q8IVE3 1493 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 UQCRHLA0A096LP55 91 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 PINLYPA6NC86 204 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 OR5H15A6NDH6 313 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 TCP11X1B4DZS4 312 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 GFPT2O94808 682 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 STARD3NLO95772 234 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 UQCRHP07919 91 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 ASNSP08243 561 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 MYBL1P10243 752 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 DLATP10515 647 aaKnown RBP2.85□□□□□ -1.95
VPS13C-208ENST00000559119 HMGN5P82970 282 aaKnown RBP2.85□□□□□ -1.95
VPS13C-208ENST00000559119 GABPB1Q06547 395 aaPredicted RBP2.85□□□□□ -1.95
VPS13C-208ENST00000559119 OVGP1Q12889 678 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 SPATA1Q5VX52 437 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 FAM219AQ8IW50 185 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 Q8N9L7 120 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 C8orf46Q8TAG6 207 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 SLC35C1Q96A29 364 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 NTNG2Q96CW9 530 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 TSSK2Q96PF2 358 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 HFM1A2PYH4 1435 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 MIA2Q96PC5 1412 aa2.85□□□□□ -1.95
VPS13C-208ENST00000559119 ZFP92A6NM28 416 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 P2RX6O15547 441 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 GPAA1O43292 621 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 B4GAT1O43505 415 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 AHCYL1O43865 530 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 MOCS2O96007 188 aaPredicted RBP2.84□□□□□ -1.95
VPS13C-208ENST00000559119 SP9P0CG40 484 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 NR2C1P13056 603 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 HSD17B1P14061 328 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 TCF4P15884 667 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 CPT2P23786 658 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 PPP2R1BP30154 601 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 KRTAP10-10P60014 251 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 IFI35P80217 286 aaPredicted RBP2.84□□□□□ -1.95
VPS13C-208ENST00000559119 SYCP1Q15431 976 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 ZNF658BQ4V348 819 aaPredicted RBP2.84□□□□□ -1.95
VPS13C-208ENST00000559119 C14orf28Q4W4Y0 310 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 PLPP4Q5VZY2 271 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 TMED8Q6PL24 325 aaPredicted RBP2.84□□□□□ -1.95
VPS13C-208ENST00000559119 PDCL2Q8N4E4 241 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 RNF175Q8N4F7 328 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 NCOA7Q8NI08 942 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 GANCQ8TET4 914 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 FAM104AQ969W3 186 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 ELSPBP1Q96BH3 223 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 BPIFA2Q96DR5 249 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 CDHR1Q96JP9 859 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 CUEDC2Q9H467 287 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 ABCC13Q9NSE7 274 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 MED17Q9NVC6 651 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 RCOR3Q9P2K3 495 aaPredicted RBP2.84□□□□□ -1.95
VPS13C-208ENST00000559119 KIF3AQ9Y496 699 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 PCDHGA1Q9Y5H4 931 aa2.84□□□□□ -1.95
VPS13C-208ENST00000559119 MAPK8IP3Q9UPT6 1336 aa2.84□□□□□ -1.96
VPS13C-208ENST00000559119 POLR1AO95602 1720 aaPredicted RBP2.84□□□□□ -1.96
VPS13C-208ENST00000559119 EIF3AQ14152 1382 aaKnown RBP2.84□□□□□ -1.96
VPS13C-208ENST00000559119 LRRC9Q6ZRR7 1453 aa2.84□□□□□ -1.96
VPS13C-208ENST00000559119 NLRP1Q9C000 1473 aa2.84□□□□□ -1.96
VPS13C-208ENST00000559119 TIAM1Q13009 1591 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 SCRIBQ14160 1630 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 PDGFBP01127 241 aaPredicted RBP2.83□□□□□ -1.96
VPS13C-208ENST00000559119 PTMAP06454 111 aaKnown RBP2.83□□□□□ -1.96
VPS13C-208ENST00000559119 LYNP07948 512 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 ID1P41134 155 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 PPP1R3AQ16821 1122 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 LBHQ53QV2 105 aaPredicted RBP2.83□□□□□ -1.96
VPS13C-208ENST00000559119 FAM46CQ5VWP2 391 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms