RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TDRD6O60522 2096 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 LRIT2A6NDA9 550 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 ISM1B1AKI9 464 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 PLRG1O43660 514 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 FADS2O95864 444 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 ITGAMP11215 1152 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 NAT1P18440 290 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 RYKP34925 604 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 C10orf62Q5T681 223 aaPredicted RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 NDUFAF5Q5TEU4 345 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 TMEM236Q5W0B7 351 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 OR4C11Q6IEV9 310 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 KIAA1324Q6UXG2 1013 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 SFTPA2Q8IWL1 248 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 SHISA5Q8N114 240 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 OR10G2Q8NGC3 310 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 VANGL1Q8TAA9 524 aaPredicted RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 UTP15Q8TED0 518 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 CREB3L4Q8TEY5 395 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 GAB3Q8WWW8 586 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 THAP11Q96EK4 314 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 ZNF300Q96RE9 604 aaPredicted RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 FUNDC2Q9BWH2 189 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 GABARAPL1Q9H0R8 117 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 PELI2Q9HAT8 420 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 SLC6A20Q9NP91 592 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 NDRG4Q9ULP0 352 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 DMDP11532 3685 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 TPST2O60704 377 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SEC14L2O76054 403 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 KRT75O95678 551 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 UQCRC2P22695 453 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 GSTM2P28161 218 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 HTR1BP28222 390 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 PEBP1P30086 187 aaKnown RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 CD6P30203 668 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 GPC1P35052 558 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 RPL3P39023 403 aaKnown RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 NUDT6P53370 316 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 MVKQ03426 396 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 OCA2Q04671 838 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SLAMF1Q13291 335 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 LRRC32Q14392 662 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 PUM1Q14671 1186 aaKnown RBP eCLIP10.08□□□□□ -0.83e-7■■□□□ 11.4
CUX1-217ENST00000558836 RPE65Q16518 533 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SDE2Q6IQ49 451 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 AHSA2Q719I0 299 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 PAGE2Q7Z2X7 111 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 LGI4Q8N135 537 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 GIPC3Q8TF64 312 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 XAGE5Q8WWM1 108 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 LZICQ8WZA0 190 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SIPA1Q96FS4 1042 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 TMEM19Q96HH6 336 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 S1PR5Q9H228 398 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 RAD21L1Q9H4I0 556 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 ARMC7Q9H6L4 198 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 KCNK12Q9HB15 430 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SIRT3Q9NTG7 399 aaPredicted RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 SELENONQ9NZV5 590 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 TRPC4Q9UBN4 977 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 BLOC1S6Q9UL45 172 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SLC17A4Q9Y2C5 497 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 FRYLO94915 3013 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 ANKRD33BA6NCL7 494 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 C5orf58C9J3I9 102 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 CACNB4O00305 520 aaPredicted RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 RECKO95980 971 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 OR12D1P0DN82 309 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 CTHP32929 405 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 KRT20P35900 424 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 FEN1P39748 380 aaKnown RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 CCT3P49368 545 aaKnown RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 GP2P55259 537 aaKnown RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 FADDQ13158 208 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SYPL1Q16563 259 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 ZC3H12BQ5HYM0 836 aaKnown RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 C18orf63Q68DL7 685 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 GTF2IRD2BQ6EKJ0 949 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 FAHD1Q6P587 224 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 IKBIPQ70UQ0 350 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 WDR53Q7Z5U6 358 aaPredicted RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 GTF2IRD2Q86UP8 949 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 TRIM73Q86UV7 250 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 ENTHD1Q8IYW4 607 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 CCDC116Q8IYX3 515 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 DOK4Q8TEW6 326 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 MTERF3Q96E29 417 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SPATA9Q9BWV2 254 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 SERHL2Q9H4I8 314 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 TMEM38AQ9H6F2 299 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 CTPS2Q9NRF8 586 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 ATG4BQ9Y4P1 393 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 FAM20BO75063 409 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 WBP4O75554 376 aaKnown RBP10.08□□□□□ -0.8
CUX1-217ENST00000558836 ARAFP10398 606 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 PCMT1P22061 227 aa10.08□□□□□ -0.8
CUX1-217ENST00000558836 CERS1P27544 350 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms