RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 RPL3P39023 403 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 BUD31P41223 144 aaPredicted RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 GSTM5P46439 218 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 GCGRP47871 477 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 TNFRSF17Q02223 184 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 TRMT5Q32P41 509 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 DNAL1Q4LDG9 190 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 RABL3Q5HYI8 236 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 PWWP2BQ6NUJ5 590 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 C8orf82Q6P1X6 216 aaPredicted RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 TLDC1Q6P9B6 456 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 DHRS13Q6UX07 377 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 RBM44Q6ZP01 1051 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 MSRB3Q8IXL7 192 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 KIAA2013Q8IYS2 634 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 PGAM4Q8N0Y7 254 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 SLC38A9Q8NBW4 561 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 MCUR1Q96AQ8 359 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 ROPN1LQ96C74 230 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 AURKBQ96GD4 344 aaPredicted RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 PEX11GQ96HA9 241 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 ITCHQ96J02 903 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 PANX1Q96RD7 426 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 GPATCH1Q9BRR8 931 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 NDC1Q9BTX1 674 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 PAIP1Q9H074 479 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 RPF2Q9H7B2 306 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 LYRM4Q9HD34 91 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 GID8Q9NWU2 228 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 FAM120CQ9NX05 1096 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 SLC25A37Q9NYZ2 338 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 ADA2Q9NZK5 511 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 GMPR2Q9P2T1 348 aaKnown RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 CES1P1Q9UKY3 287 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 RARRES3Q9UL19 164 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 MAPRE3Q9UPY8 281 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 NEUROG3Q9Y4Z2 214 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 PCDHB14Q9Y5E9 798 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 PTPRZ1P23471 2315 aaPredicted RBP9.63□□□□□ -0.87
SRP54-208ENST00000555557 PCNX2A6NKB5 2137 aa9.63□□□□□ -0.87
SRP54-208ENST00000555557 A0A1W2PRB8 838 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 OR2W5A6NFC9 320 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 PROB1E7EW31 1015 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 RNASET2O00584 256 aaKnown RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 CYR61O00622 381 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 GFRA3O60609 400 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 LDB3O75112 727 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 CDC123O75794 336 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 ANP32DO95626 131 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 NTRK1P04629 796 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SLC6A2P23975 617 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 CALRP27797 417 aaKnown RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 PTPN6P29350 595 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 MSX2P35548 267 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 FEN1P39748 380 aaKnown RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 AVPR1BP47901 424 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SLC7A2P52569 658 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 HBA1P69905 142 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 ID2Q02363 134 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 DUSP2Q05923 314 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 TRA2AQ13595 282 aaKnown RBP eCLIP9.62□□□□□ -0.87
SRP54-208ENST00000555557 SELPLGQ14242 412 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 ANXA8L1Q5VT79 327 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 NANOGP8Q6NSW7 305 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SLC48A1Q6P1K1 146 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 HACD2Q6Y1H2 254 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 ZNF621Q6ZSS3 439 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 ZNF551Q7Z340 670 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 SLCO6A1Q86UG4 719 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 CCDC116Q8IYX3 515 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 AGBL5Q8NDL9 886 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 VPS37AQ8NEZ2 397 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 OR4A15Q8NGL6 344 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 PMEPA1Q969W9 287 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 CNRIP1Q96F85 164 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 CGREF1Q99674 301 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 YIPF2Q9BWQ6 316 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SLC7A5P2Q9GIP4 190 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 NANOGQ9H9S0 305 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SLC35C2Q9NQQ7 365 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 ENAMQ9NRM1 1142 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 PHF11Q9UIL8 331 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 MAN2B2Q9Y2E5 1009 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SPAARA0A1B0GVQ0 90 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 PDPK1O15530 556 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 JRKO75564 520 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 ITIH1P19827 911 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 TCN1P20061 433 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 TLX1P31314 330 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 EMP3P54852 163 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 MANFP55145 182 aaKnown RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 PCBP4P57723 403 aaKnown RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 RAB38P57729 211 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 MTPNP58546 118 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 E2F1Q01094 437 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 BNC2Q6ZN30 1099 aaPredicted RBP9.62□□□□□ -0.87
SRP54-208ENST00000555557 PPP1R3BQ86XI6 285 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 HPS6Q86YV9 775 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 TMEM126BQ8IUX1 230 aa9.62□□□□□ -0.87
SRP54-208ENST00000555557 SLC15A3Q8IY34 581 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms