RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PDFQ9HBH1 243 aa2.75□□□□□ -1.97
SCFD1-216ENST00000555550 EXOC6BQ9Y2D4 811 aa2.75□□□□□ -1.97
SCFD1-216ENST00000555550 ETV7Q9Y603 341 aa2.75□□□□□ -1.97
SCFD1-216ENST00000555550 PFASO15067 1338 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 ZNF724A8MTY0 619 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 HMGB1P1B2RPK0 211 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-216ENST00000555550 H0Y9J4 135 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 M0R296 226 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 CTDSPLO15194 276 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 DUSP11O75319 330 aaKnown RBP2.74□□□□□ -1.97
SCFD1-216ENST00000555550 GPX3P22352 226 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 TIA1P31483 386 aaKnown RBP eCLIP2.74□□□□□ -1.97
SCFD1-216ENST00000555550 HMGCLP35914 325 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 FHITP49789 147 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 FKBP1BP68106 108 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 TWISTNBQ3B726 338 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-216ENST00000555550 ZNF600Q6ZNG1 722 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 VASH2Q86V25 355 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 CCDC71Q8IV32 467 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-216ENST00000555550 ZNF444Q8N0Y2 327 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-216ENST00000555550 SLC22A18ASQ8N1D0 253 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 UBLCP1Q8WVY7 318 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-216ENST00000555550 CDHR1Q96JP9 859 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 RANBP9Q96S59 729 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 C17orf62Q9BQA9 187 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 IDI2Q9BXS1 227 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 AP1M1Q9BXS5 423 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 ZBP1Q9H171 429 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 ZNF665Q9H7R5 613 aa2.74□□□□□ -1.97
SCFD1-216ENST00000555550 TRAV34A0A0B4J273 112 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 FAM220BPB1ANY3 271 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 MCF2LO15068 1137 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 DKC1O60832 514 aaKnown RBP eCLIP2.73□□□□□ -1.97
SCFD1-216ENST00000555550 LETM1O95202 739 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-216ENST00000555550 FHP07954 510 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 HSD17B1P14061 328 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 PPP2R1BP30154 601 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 SLC3A1Q07837 685 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 EIF4EBP2Q13542 120 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-216ENST00000555550 IQCCQ4KMZ1 466 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 ABRAXAS1Q6UWZ7 409 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 PAMR1Q6UXH9 720 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 CACUL1Q86Y37 369 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 KLHL7Q8IXQ5 586 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 FLVCR1-AS1Q8TAF5 88 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 CKAP2Q8WWK9 683 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 DNASE1L2Q92874 299 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 ERGIC2Q96RQ1 377 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 MAPKAP1Q9BPZ7 522 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 ATG101Q9BSB4 218 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 ELL3Q9HB65 397 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-216ENST00000555550 ZNF275Q9NSD4 429 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-216ENST00000555550 SWAP70Q9UH65 585 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 ITGA11Q9UKX5 1188 aa2.73□□□□□ -1.97
SCFD1-216ENST00000555550 TDRD6O60522 2096 aaKnown RBP2.73□□□□□ -1.97
SCFD1-216ENST00000555550 YDJCA8MPS7 323 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 CSO75390 466 aaKnown RBP2.72□□□□□ -1.97
SCFD1-216ENST00000555550 OR6A2O95222 327 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 ZFYP08048 801 aaPredicted RBP2.72□□□□□ -1.97
SCFD1-216ENST00000555550 BDNFP23560 247 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 GJB2P29033 226 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 RGRP47804 291 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 FNTAP49354 379 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 AKAP17AQ02040 695 aaKnown RBP2.72□□□□□ -1.97
SCFD1-216ENST00000555550 CAPRIN1Q14444 709 aaKnown RBP2.72□□□□□ -1.97
SCFD1-216ENST00000555550 GSG1Q2KHT4 349 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 TRAT1Q6PIZ9 186 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 RAPH1Q70E73 1250 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 METTL23Q86XA0 190 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 CCDC197Q8NCU1 140 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 ICA1LQ8NDH6 482 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 TBCKQ8TEA7 893 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 GANCQ8TET4 914 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 TCP11Q8WWU5 503 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 ESAMQ96AP7 390 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 CUEDC2Q9H467 287 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 ASB8Q9H765 288 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 IL17CQ9P0M4 197 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 CLEC4EQ9ULY5 219 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 POMT1Q9Y6A1 747 aa2.72□□□□□ -1.97
SCFD1-216ENST00000555550 KLF18A0A0U1RQI7 1052 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 E2F3O00716 465 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 CCSO14618 274 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 TNFSF11O14788 317 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 ST8SIA3O43173 380 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 FCGR3AP08637 254 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 GSTA2P09210 222 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 GIG44P09565 113 aaPredicted RBP2.71□□□□□ -1.98
SCFD1-216ENST00000555550 CALML3P27482 149 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 CCND3P30281 292 aaPredicted RBP2.71□□□□□ -1.98
SCFD1-216ENST00000555550 GP5P40197 560 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 IER3P46695 156 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 SLC17A1Q14916 467 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 PSMD6Q15008 389 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 ODF2Q5BJF6 829 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 CAVIN1Q6NZI2 390 aaKnown RBP2.71□□□□□ -1.98
SCFD1-216ENST00000555550 SHQ1Q6PI26 577 aaKnown RBP2.71□□□□□ -1.98
SCFD1-216ENST00000555550 PET117Q6UWS5 81 aa2.71□□□□□ -1.98
SCFD1-216ENST00000555550 THNSL1Q8IYQ7 743 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms