RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 KLHL25Q9H0H3 589 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 COPS7BQ9H9Q2 264 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 PDE7BQ9NP56 450 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 MYNNQ9NPC7 610 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 SOHLH2Q9NX45 425 aa13.7□□□□□ -0.22
SHMT2-208ENST00000553868 LEF1Q9UJU2 399 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-208ENST00000553868 PRRC2CQ9Y520 2896 aaKnown RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 A0A1W2PP18 115 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 H0YGG7 62 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 MRASO14807 208 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 AIM2O14862 343 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 TOX3O15405 576 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 ERI3O43414 337 aaKnown RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 DNAJC8O75937 253 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 C9P02748 559 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 KLK1P06870 262 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 CD1CP29017 333 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 HNRNPH1P31943 449 aaKnown RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 NUDT2P50583 147 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 MAPK12P53778 367 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 ARF3P61204 181 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 RAE1P78406 368 aaKnown RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 SRSF11Q05519 484 aaKnown RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 CDC20Q12834 499 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 SPRED3Q2MJR0 410 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 TMTC4Q5T4D3 741 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 TMEM164Q5U3C3 297 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 NKAIN2Q5VXU1 208 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 OR4C11Q6IEV9 310 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 C16orf89Q6UX73 402 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 ABHD13Q7L211 337 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 PRSS42Q7Z5A4 293 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 VN1R4Q7Z5H5 301 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 R3HCC1LQ7Z5L2 792 aaKnown RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 SLITRK4Q8IW52 837 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 TMEM132CQ8N3T6 1108 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 CSNK1A1LQ8N752 337 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 CDC26Q8NHZ8 85 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 N4BP2L2Q92802 583 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 TESCQ96BS2 214 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 SLC7A6OSQ96CW6 309 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 RCN3Q96D15 328 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 MS4A6EQ96DS6 147 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 PPM1MQ96MI6 270 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 RAB3IPQ96QF0 476 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 DDX31Q9H8H2 851 aaKnown RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 GID8Q9NWU2 228 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 BAIAP2L1Q9UHR4 511 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 ERRFI1Q9UJM3 462 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-208ENST00000553868 PLCL2Q9UPR0 1127 aa13.69□□□□□ -0.22
SHMT2-208ENST00000553868 TBX6O95947 436 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-208ENST00000553868 TACR1P25103 407 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 S100A3P33764 101 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 BSGP35613 385 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 PLA2G16P53816 162 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 GFERP55789 205 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 SKP1P63208 163 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ACTN3Q08043 901 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-208ENST00000553868 REP15Q6BDI9 236 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 NIPAL1Q6NVV3 410 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 TMEM71Q6P5X7 295 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ABHD17CQ6PCB6 329 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 HACD2Q6Y1H2 254 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 MSANTD1Q6ZTZ1 278 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ASB18Q6ZVZ8 466 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ASRGL1Q7L266 308 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 MCATQ8IVS2 390 aaKnown RBP13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ZCCHC7Q8N3Z6 543 aaKnown RBP13.68□□□□□ -0.22
SHMT2-208ENST00000553868 DNAJC22Q8N4W6 341 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 RCBTB1Q8NDN9 531 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 DNAJB8Q8NHS0 232 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 CLHC1Q8NHS4 586 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 PRR7Q8TB68 274 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 C16orf78Q8WTQ4 265 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 MCUR1Q96AQ8 359 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ROPN1LQ96C74 230 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 MTERF3Q96E29 417 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 POM121Q96HA1 1249 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 C17orf62Q9BQA9 187 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 FAIM2Q9BWQ8 316 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ACTL8Q9H568 366 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 RMND5AQ9H871 391 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 ATAD3AQ9NVI7 634 aa13.68□□□□□ -0.22
SHMT2-208ENST00000553868 TNRC6AQ8NDV7 1962 aaKnown RBP13.68□□□□□ -0.22
SHMT2-208ENST00000553868 EEDO75530 441 aaKnown RBP13.67□□□□□ -0.22
SHMT2-208ENST00000553868 CPNE6O95741 557 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 NPPAP01160 153 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 PDGFAP04085 211 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 EIF2S1P05198 315 aaKnown RBP13.67□□□□□ -0.22
SHMT2-208ENST00000553868 COX7A2P14406 83 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 CAPN3P20807 821 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 HIST1H1TP22492 207 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-208ENST00000553868 TPP2P29144 1249 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-208ENST00000553868 IL12AP29459 219 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 HSD11B2P80365 405 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 LRRC74AQ0VAA2 488 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 HYAL2Q12891 473 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 SLC9A5Q14940 896 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 HEPACAMQ14CZ8 416 aa13.67□□□□□ -0.22
SHMT2-208ENST00000553868 NDUFA9Q16795 377 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms