RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 FAM92BQ6ZTR7 304 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 FRA10AC1Q70Z53 315 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TMEM151BQ8IW70 566 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TUSC5Q8IXB3 177 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 SPATA6LQ8N4H0 392 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 MREGQ8N565 214 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 FBXO15Q8NCQ5 510 aaPredicted RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TMEM52Q8NDY8 209 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 OR2L8Q8NGY9 312 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ANKRD7Q92527 254 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 RSC1A1Q92681 617 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 SLC22A18Q96BI1 424 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 C3orf49Q96BT1 292 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 GRAMD1AQ96CP6 724 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TSNARE1Q96NA8 513 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 IL17FQ96PD4 163 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 GBP5Q96PP8 586 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 PKP4Q99569 1192 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 DERL2Q9GZP9 239 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 RAB33BQ9H082 229 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 NMRAL1Q9HBL8 299 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 C19orf73Q9NVV2 129 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 TMEM9Q9P0T7 183 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 SPATA7Q9P0W8 599 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 CPSF2Q9P2I0 782 aaKnown RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 EPHA6Q9UF33 1036 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ENTPD2Q9Y5L3 495 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 LYVE1Q9Y5Y7 322 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 POMT1Q9Y6A1 747 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ARHGEF17Q96PE2 2063 aaPredicted RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 ZFC3H1O60293 1989 aaKnown RBP4.88□□□□□ -1.63
CLIP1-217ENST00000543205 LAMA1P25391 3075 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 BPTFQ12830 3046 aa4.88□□□□□ -1.63
CLIP1-217ENST00000543205 PIKFYVEQ9Y2I7 2098 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 IGHV5-10-1A0A0J9YXX1 117 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 LINC00854A0A1B0GVQ3 168 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 FITM1A5D6W6 292 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CCDC151A5D8V7 595 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PCNX2A6NKB5 2137 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CDC7O00311 574 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 WISP3O95389 354 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ABHD16AO95870 558 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 C9P02748 559 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ALDOAP04075 364 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 C2P06681 752 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 NUDT17P0C025 328 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SLC35E2BP0CK96 405 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CD1DP15813 335 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TMEM11P17152 192 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CDH3P22223 829 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CPT2P23786 658 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 GCAP28676 217 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CSTF2P33240 577 aaKnown RBP eCLIP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 HNMTP50135 292 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 GFERP55789 205 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 AP1S2P56377 157 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ZFP36L1Q07352 338 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TRA2AQ13595 282 aaKnown RBP eCLIP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 GRB7Q14451 532 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 KIR2DS3Q14952 304 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ARHGAP19Q14CB8 494 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MAPKAPK3Q16644 382 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CYP2A13Q16696 494 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PHKG1Q16816 387 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 FAM83EQ2M2I3 478 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CACHD1Q5VU97 1274 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PRAMEF9Q5VWM5 478 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TMPRSS9Q7Z410 1059 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ADAMTSL2Q86TH1 951 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TAX1BP1Q86VP1 789 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SPPL2CQ8IUH8 684 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ADGRF3Q8IZF5 1079 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 C2orf73Q8N5S3 287 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ATL1Q8WXF7 558 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SDCCAG3Q96C92 435 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CD180Q99467 661 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 NRTNQ99748 197 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 FUZQ9BT04 418 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ROPN1BQ9BZX4 212 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 REXO4Q9GZR2 422 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MRPL46Q9H2W6 279 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ROPN1Q9HAT0 212 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ARL15Q9NXU5 204 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ADGRE2Q9UHX3 823 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ANGPTL2Q9UKU9 493 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 PDE10AQ9Y233 779 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 MN1Q10571 1320 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 GOLGA4Q13439 2230 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TRAV34A0A0B4J273 112 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TLCD2A6NGC4 264 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 H7BY64 318 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CASQ2O14958 399 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 TOX3O15405 576 aaPredicted RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CTIFO43310 598 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 KIF1CO43896 1103 aaKnown RBP4.87□□□□□ -1.63
CLIP1-217ENST00000543205 CDH16O75309 829 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 KLHL2O95198 593 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 SLC16A8O95907 504 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 HPXP02790 462 aa4.87□□□□□ -1.63
CLIP1-217ENST00000543205 ANXA5P08758 320 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms