RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 DEFB134Q4QY38 66 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ANKRD20A4Q4UJ75 823 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 FASTKD1Q53R41 847 aaKnown RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ANKRD20A2Q5SQ80 823 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ANKRD20A1Q5TYW2 823 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ANKRD20A3Q5VUR7 823 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CDKAL1Q5VV42 579 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 NSUN5P2Q63ZY6 315 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 E4F1Q66K89 784 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ITPRIPL1Q6GPH6 555 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF425Q6IV72 752 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 LETMD1Q6P1Q0 360 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 MFSD7Q6UXD7 560 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 PACS1Q6VY07 963 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 UBE2R2Q712K3 238 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 VN1R4Q7Z5H5 301 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CAND1Q86VP6 1230 aaKnown RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 GPALPP1Q8IXQ4 340 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 C3orf56Q8N813 242 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 C9orf106Q8NAJ2 232 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CAMKVQ8NCB2 501 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 OR9A1PQ8NGU1 263 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 HMGCLL1Q8TB92 370 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 STYXQ8WUJ0 223 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ANKRD9Q96BM1 317 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 VMP1Q96GC9 406 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 PDLIM2Q96JY6 352 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 OR1F2PQ96R84 312 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 VAT1Q99536 393 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 TIMP4Q99727 224 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 EBNA1BP2Q99848 306 aaKnown RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 FERMT1Q9BQL6 677 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 GORASP1Q9BQQ3 440 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 RHNO1Q9BSD3 238 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CARD6Q9BX69 1037 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 KRTAP9-8Q9BYQ0 159 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 MRPL18Q9H0U6 180 aaKnown RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 GBA3Q9H227 469 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CHODLQ9H9P2 273 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 EIF2B3Q9NR50 452 aaKnown RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF701Q9NV72 531 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 GFOD1Q9NXC2 390 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 CHMP5Q9NZZ3 219 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 JKAMPQ9P055 326 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 SPATA7Q9P0W8 599 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ANAPC5Q9UJX4 755 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF223Q9UK11 482 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 TRHDEQ9UKU6 1024 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF148Q9UQR1 794 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 GPR55Q9Y2T6 319 aaPredicted RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 AAR2Q9Y312 384 aaKnown RBP4.37□□□□□ -1.71
LIMS1-214ENST00000542845 SLC6A5Q9Y345 797 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 TESMINQ9Y4I5 508 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 MRFAP1Q9Y605 127 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 NINQ8N4C6 2090 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 DOCK7Q96N67 2140 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 USF3Q68DE3 2245 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 ABCA1O95477 2261 aa4.37□□□□□ -1.71
LIMS1-214ENST00000542845 RAI1Q7Z5J4 1906 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 A0A0G2JK05 382 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 TCRBV16S1A1N1A0A5B0 115 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 FAM234BA2RU67 622 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 LGALS16A8MUM7 142 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 H7C0S8 307 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SSX4O60224 188 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 KIF5CO60282 957 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 LCMT2O60294 686 aaKnown RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 NDUFS7O75251 213 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 AVILO75366 819 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PEX14O75381 377 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 GOT2P00505 430 aaKnown RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 TNNI3P19429 210 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 IL10P22301 178 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 CRYGSP22914 178 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PPP2R1BP30154 601 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 FOXN2P32314 431 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PPARGP37231 505 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 COILP38432 576 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SLCO1A2P46721 670 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 NR2C2P49116 596 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 CASP9P55211 416 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 RAB8AP61006 207 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 RPS15AP62244 130 aaKnown RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 RPS4XP62701 263 aaKnown RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 MEF2AQ02078 507 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 CRYZQ08257 329 aaKnown RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 FAPQ12884 760 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 TFDP2Q14188 446 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 RCAN2Q14206 197 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PHKG1Q16816 387 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 P3H1Q32P28 736 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SLC22A10Q63ZE4 541 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 CYB5R2Q6BCY4 276 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 GTF2IRD2BQ6EKJ0 949 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 VASNQ6EMK4 673 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 DENND5AQ6IQ26 1287 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 KRTAP5-3Q6L8H2 238 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 CAPN13Q6MZZ7 669 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 OPN5Q6U736 354 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 HSDL2Q6YN16 418 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms