RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TGM3Q08188 693 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 FBXO43Q4G163 708 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 ATAT1Q5SQI0 421 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 MRM1Q6IN84 353 aaKnown RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 IQCF2Q8IXL9 164 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 OR2A1Q8NGT9 310 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 RHOXF1Q8NHV9 184 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 MAL2Q969L2 176 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 VMP1Q96GC9 406 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 COX4I2Q96KJ9 171 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 C12orf66Q96MD2 445 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 TEFMQ96QE5 360 aaKnown RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 FERD3LQ96RJ6 166 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 INSM2Q96T92 566 aaPredicted RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 BARD1Q99728 777 aaKnown RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 TRMT61BQ9BVS5 477 aaKnown RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 FUNDC2Q9BWH2 189 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 BTBD2Q9BX70 525 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 LGR4Q9BXB1 951 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 RACGAP1Q9H0H5 632 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 LHX9Q9NQ69 397 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 TBC1D23Q9NUY8 699 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 CUEDC1Q9NWM3 386 aaPredicted RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 PAK1IP1Q9NWT1 392 aaPredicted RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 LYARQ9NX58 379 aaKnown RBP9.38□□□□□ -0.91
SS18-205ENST00000542420 NDOR1Q9UHB4 597 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 ACAD8Q9UKU7 415 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 COLEC10Q9Y6Z7 277 aa9.38□□□□□ -0.91
SS18-205ENST00000542420 LRP4O75096 1905 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CCDC88CQ9P219 2028 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 FAM20BO75063 409 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CLPXO76031 633 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SLITRK5O94991 958 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CCNB2O95067 398 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 LAMP2P13473 410 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 ZNF12P17014 697 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CBLP22681 906 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 MEF2AQ02078 507 aaPredicted RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 SIM2Q14190 667 aaPredicted RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 CEBPEQ15744 281 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 COLEC12Q5KU26 742 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 ANKRD34AQ69YU3 496 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SYCE2Q6PIF2 218 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 ANGPTL8Q6UXH0 198 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 DCDC5Q6ZRR9 648 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SLC16A12Q6ZSM3 486 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 GALNT5Q7Z7M9 940 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 P3H2Q8IVL5 708 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 LGI4Q8N135 537 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 LINC01555Q8NAE3 123 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 BBS10Q8TAM1 723 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CNIH3Q8TBE1 160 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 ZFPM2Q8WW38 1151 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 S100ZQ8WXG8 99 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CRELD1Q96HD1 420 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 APOOQ9BUR5 198 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SLC17A9Q9BYT1 436 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 ROGDIQ9GZN7 287 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 MBNL1Q9NR56 388 aaKnown RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 SEMA3GQ9NS98 782 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SIRT3Q9NTG7 399 aaPredicted RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 ACER3Q9NUN7 267 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CNOT2Q9NZN8 540 aaKnown RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 P2RX2Q9UBL9 471 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 PSORS1C1Q9UIG5 152 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 PCOLCE2Q9UKZ9 415 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SNX7Q9UNH6 387 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 MGAT4BQ9UQ53 548 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 GPC6Q9Y625 555 aaPredicted RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 DSPPQ9NZW4 1301 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 A0A1W2PPW3 197 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 LRIT2A6NDA9 550 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 WBP4O75554 376 aaKnown RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 C1QCP02747 245 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 DNTTP04053 509 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 EN2P19622 333 aaPredicted RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 CMPK1P30085 196 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 NTSP30990 170 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 GDI1P31150 447 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SERPINB10P48595 397 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 KHKP50053 298 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 FGL2Q14314 439 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 MLF2Q15773 248 aaPredicted RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 NDUFA9Q16795 377 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 PRSS53Q2L4Q9 553 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 CEACAM20Q6UY09 585 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SFTPA1Q8IWL2 248 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 ENTHD1Q8IYW4 607 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 SAMD14Q8IZD0 417 aaPredicted RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 GJD3Q8N144 294 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 IL17RCQ8NAC3 791 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 MFSD9Q8NBP5 474 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 ZNF540Q8NDQ6 660 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 RIPOR3Q96MK2 946 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 KCNC2Q96PR1 638 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 F2RL3Q96RI0 385 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 FEVQ99581 238 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 PLA2G2FQ9BZM2 168 aa9.37□□□□□ -0.91
SS18-205ENST00000542420 LIN28AQ9H9Z2 209 aaKnown RBP9.37□□□□□ -0.91
SS18-205ENST00000542420 MRPS30Q9NP92 439 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms