RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 YBX2Q9Y2T7 364 aaKnown RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 PKP3Q9Y446 797 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 WNT6Q9Y6F9 365 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 PLXNB3Q9ULL4 1909 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 LOC100506127A0A0U1RQW1 187 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 AGAP14A8MT82 685 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 WASH3PC4AMC7 463 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF197O14709 1029 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 KLK8O60259 260 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 KERAO60938 352 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 CYP7B1O75881 506 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 SUPT7LO94864 414 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 KLHL18O94889 574 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 FTH1P02794 183 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 CYP4B1P13584 511 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 LHCGRP22888 699 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 SERPINA4P29622 427 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 PTGER3P43115 390 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 RECQLP46063 649 aaPredicted RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 CDH13P55290 713 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 SNRPD1P62314 119 aaKnown RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 HERVK_113P63132 956 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 CBX2Q14781 532 aaPredicted RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 BCL7AQ4VC05 210 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 C8orf82Q6P1X6 216 aaPredicted RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 TMEM65Q6PI78 240 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 HACD2Q6Y1H2 254 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 DPY19L3Q6ZPD9 716 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 FJX1Q86VR8 437 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 KRT73Q86Y46 540 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 SIDT2Q8NBJ9 832 aaKnown RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 OTUB2Q96DC9 234 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 ST6GAL2Q96JF0 529 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 NSMCE2Q96MF7 247 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 NEDD4LQ96PU5 975 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 RHNO1Q9BSD3 238 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 ERVK-6Q9BXR3 956 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 GPR63Q9BZJ6 419 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 AKTIPQ9H8T0 292 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 MEAF6Q9HAF1 191 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 RANGRFQ9HD47 186 aaPredicted RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 ERVK13-1Q9NX77 482 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 TAS2R9Q9NYW1 312 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 GLTPQ9NZD2 209 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 EIF3KQ9UBQ5 218 aaKnown RBP7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 U3KQV3 271 aa7.65□□□□□ -1.18
PDLIM5-221ENST00000542407 MYOFQ9NZM1 2061 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 C2orf16Q68DN1 1984 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 LEUTXA8MZ59 168 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 FXYD1O00168 92 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 LILRB5O75023 590 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 PPM1BO75688 479 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 PRAMEF1O95521 474 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 ANGPTL1O95841 491 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 ESR1P03372 595 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 CISD3P0C7P0 127 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 GPX3P22352 226 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 RPS3P23396 243 aaKnown RBP eCLIP7.65□□□□□ -1.191e-8■■■■□ 20.5
PDLIM5-221ENST00000542407 SNRPD2P62316 118 aaKnown RBP7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 NFATC2Q13469 925 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 CARD16Q5EG05 197 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 TMEM31Q5JXX7 168 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 PAPD4Q6PIY7 484 aaKnown RBP7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 DEGS2Q6QHC5 323 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 FAM151BQ6UXP7 276 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 LINC00299Q6ZSB3 139 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 PRSS42Q7Z5A4 293 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 NRARPQ7Z6K4 114 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 RASGRP3Q8IV61 690 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 UBQLNLQ8IYU4 475 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 MIER2Q8N344 545 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 CHST14Q8NCH0 376 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 OR52H1Q8NGJ2 320 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 OR2A12Q8NGT7 310 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 FUBP1Q96AE4 644 aaKnown RBP7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 SCRN2Q96FV2 425 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF300Q96RE9 604 aaPredicted RBP7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 BBS4Q96RK4 519 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF416Q9BWM5 594 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC19A3Q9BZV2 496 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 PPA2Q9H2U2 334 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 ZMYM5Q9UJ78 669 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC22A14Q9Y267 594 aa7.65□□□□□ -1.19
PDLIM5-221ENST00000542407 LOC100130705A0A1B0GUX0 176 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 TCRBV5S2A0A599 114 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 LRRC14BA6NHZ5 514 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 CDC7O00311 574 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 CBR3O75828 277 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 MED26O95402 600 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 YES1P07947 543 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GNSP15586 552 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GGT5P36269 586 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GABARAPL2P60520 117 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 FLI1Q01543 452 aaPredicted RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC3A1Q07837 685 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 CLN3Q13286 438 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 SQSTM1Q13501 440 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 KRR1Q13601 381 aaKnown RBP7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 GRB7Q14451 532 aa7.64□□□□□ -1.19
PDLIM5-221ENST00000542407 DHCR24Q15392 516 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms