RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PRPF18Q99633 342 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 MAPKAP1Q9BPZ7 522 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 VN1R1Q9GZP7 353 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 SOX17Q9H6I2 414 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 MYNNQ9NPC7 610 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 GIMAP4Q9NUV9 329 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 PNPOQ9NVS9 261 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 IL17BQ9UHF5 180 aa16.49■□□□□ 0.23
CLSTN3-210ENST00000540931 K7ENP7 123 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 EDF1O60869 148 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 COX7A2P14406 83 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 OLR1P78380 273 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 SYT16Q17RD7 645 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 GALNTL6Q49A17 601 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 C6orf136Q5SQH8 315 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 NDUFAF5Q5TEU4 345 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 OGFOD2Q6N063 350 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 INO80CQ6PI98 192 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 TMEM205Q6UW68 189 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 VASH2Q86V25 355 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 ACTRT2Q8TDY3 377 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 TRIM55Q9BYV6 548 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 NUF2Q9BZD4 464 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 LANCL2Q9NS86 450 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 G3BP2Q9UN86 482 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 PCDHA9Q9Y5H5 950 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 USH1CQ9Y6N9 552 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 SCN3AQ9NY46 2000 aa16.48■□□□□ 0.23
CLSTN3-210ENST00000540931 LOC102723996A0A087X1L8 192 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 TCP11X1B4DZS4 312 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 TMPRSS11DO60235 418 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 B4GALT2O60909 372 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 PEX11AO75192 247 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 KITP10721 976 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 ALOX15P16050 662 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 F8A1P23610 371 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 PIK3R1P27986 724 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 GALNSP34059 522 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 RPL38P63173 70 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 RHAGQ02094 409 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 ACTN3Q08043 901 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 CDC20Q12834 499 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 SCUBE1Q8IWY4 988 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 TM4SF18Q96CE8 201 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 RBM18Q96H35 190 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 MAELQ96JY0 434 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 TUBB6Q9BUF5 446 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 ZNF395Q9H8N7 513 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 MIEF1Q9NQG6 463 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 ATG4BQ9Y4P1 393 aa16.47■□□□□ 0.23
CLSTN3-210ENST00000540931 FER1L5A0AVI2 2057 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 POLR3GO15318 223 aaPredicted RBP16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 SLITRK5O94991 958 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 GPR75O95800 540 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 B3GALT4O96024 378 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 ITGB2P05107 769 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 UMODP07911 640 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 PRR35P0CG20 571 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 DDCP20711 480 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 PRPS1L1P21108 318 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 HNRNPH2P55795 449 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 TAS2R50P59544 299 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 PLIN5Q00G26 463 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 ERV3-1Q14264 604 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 EXT1Q16394 746 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 RFTN2Q52LD8 501 aaPredicted RBP16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 C6orf163Q5TEZ5 329 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 ATG14Q6ZNE5 492 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 NDUFAF7Q7L592 441 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 CPEB2Q7Z5Q1 589 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 DTWD1Q8N5C7 304 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 FAM47BQ8NA70 645 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 CLEC1AQ8NC01 280 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 OR4K14Q8NGD5 310 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 ADAMTS17Q8TE56 1095 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 C16orf78Q8WTQ4 265 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 DAZLQ92904 295 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 ART5Q96L15 291 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 UBL7Q96S82 380 aaPredicted RBP16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 LPAR4Q99677 370 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 CCDC28BQ9BUN5 200 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 SORBS1Q9BX66 1292 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 AKTIPQ9H8T0 292 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 ATAD3AQ9NVI7 634 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 TAS2R7Q9NYW3 318 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 DLGAP4Q9Y2H0 992 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 ZNF780BQ9Y6R6 833 aa16.46■□□□□ 0.23
CLSTN3-210ENST00000540931 IGKV3D-11A0A0A0MRZ8 115 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 ATP6AP2A0A1C7CYW4 349 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 A0A1W2PR48 441 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 TCRBV16S1A1N1A0A5B0 115 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 CDC14CA4D256 554 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 TBX19O60806 448 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 CNOT3O75175 753 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 ATP6AP2O75787 350 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 AIFM1O95831 613 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 HPP00738 406 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 VIMP08670 466 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 OTX2P32243 289 aa16.45■□□□□ 0.22
CLSTN3-210ENST00000540931 RAE1P78406 368 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms