RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PCDHB14Q9Y5E9 798 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 GPR89AB7ZAQ6 455 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 GPR89BP0CG08 455 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 DPP6P42658 865 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 RNF144AP50876 292 aaPredicted RBP13.51□□□□□ -0.25
USP3-204ENST00000540797 CHAF1BQ13112 559 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 KCNK13Q9HB14 408 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 ZBTB20Q9HC78 741 aaPredicted RBP13.51□□□□□ -0.25
USP3-204ENST00000540797 IFT46Q9NQC8 304 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 HCN4Q9Y3Q4 1203 aa13.51□□□□□ -0.25
USP3-204ENST00000540797 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 AK4P27144 223 aaPredicted RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 CASP6P55212 293 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 RHDQ02161 417 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 IL18R1Q13478 541 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 SMCO1Q147U7 214 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 GRHL2Q6ISB3 625 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 TMEFF1Q8IYR6 380 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 DUSP23Q9BVJ7 150 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 NRAPQ86VF7 1730 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 PRSS38A1L453 326 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 ZNF99A8MXY4 864 aaPredicted RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 EIF1AYO14602 144 aaKnown RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 CER1O95813 267 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 CCNOP22674 350 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 RBBP4Q09028 425 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 NPTX1Q15818 432 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 C5orf22Q49AR2 442 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 IER5LQ5T953 404 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 GALNT10Q86SR1 603 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 PNLDC1Q8NA58 520 aaKnown RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 GNPDA2Q8TDQ7 276 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 SYT11Q9BT88 431 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 HHATLQ9HCP6 504 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 TLX2O43763 284 aaPredicted RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 ITGA10O75578 1167 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 BCAS2O75934 225 aaPredicted RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 PAX7P23759 505 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 TXNL4AP83876 142 aaKnown RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 KIAA0895LQ68EN5 471 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 PIANPQ8IYJ0 282 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 MEIOBQ8N635 442 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 PNPLA1Q8N8W4 532 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 C9orf43Q8TAL5 461 aaPredicted RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 POLDIP3Q9BY77 421 aaKnown RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 IGSF5Q9NSI5 407 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 MGAT4BQ9UQ53 548 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 WBP11Q9Y2W2 641 aaKnown RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 A0A0J9YY10 115 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 SCAMP2O15127 329 aaKnown RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 CDC40O60508 579 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP3-204ENST00000540797 HK1P19367 917 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 RGRP47804 291 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 ACADVLP49748 655 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 ZNF140P52738 457 aaPredicted RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 OSTF1Q92882 214 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 HSPBAP1Q96EW2 488 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 HYKKA2RU49 373 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 FAM227AF5H4B4 570 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 POLR1CO15160 346 aaPredicted RBP13.5□□□□□ -0.25
USP3-204ENST00000540797 ABLIM3O94929 683 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 AK1P00568 194 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 IRS1P35568 1242 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 CLRN1P58418 232 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 TSPAN5P62079 268 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 LIN52Q52LA3 116 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 IDNKQ5T6J7 187 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 KANK2Q63ZY3 851 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 L3HYPDHQ96EM0 354 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 SLC22A12Q96S37 553 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 ORAI3Q9BRQ5 295 aa13.5□□□□□ -0.25
USP3-204ENST00000540797 FAM240BA0A1B0GVZ2 78 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 NPIPA2E9PIF3 369 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 NPIPA3F8WFD2 350 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 ABLIM1O14639 778 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 PLD2O14939 933 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 CDH11P55287 796 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 CLDN8P56748 225 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 OR12D2P58182 307 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 KIR2DS3Q14952 304 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 SLC14A2Q15849 920 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 C16orf78Q8WTQ4 265 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 ASB6Q9NWX5 421 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 LHX3Q9UBR4 397 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 P04436 131 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 MAOBP27338 520 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 TAS2R38P59533 333 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 MLF2Q15773 248 aaPredicted RBP13.49□□□□□ -0.25
USP3-204ENST00000540797 TIGD6Q17RP2 521 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 VMACQ2NL98 169 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 TMPRSS9Q7Z410 1059 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 COMMD6Q7Z4G1 85 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 OR52P1PQ8NH57 321 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 NXPE3Q969Y0 559 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 RHBDF1Q96CC6 855 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 TIGARQ9NQ88 270 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 MYH7P12883 1935 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 LOC285095A0A1B0GVY8 99 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 C11orf98E9PRG8 122 aa13.49□□□□□ -0.25
USP3-204ENST00000540797 H3BNC9 293 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms