RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 TRIM40Q6P9F5 258 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 TMIGD1Q6UXZ0 262 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 ULK2Q8IYT8 1036 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 TTLQ8NG68 377 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 OR5L2Q8NGL0 311 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 RNASE6Q93091 150 aaKnown RBP12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 LRRC46Q96FV0 321 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 QRFPRQ96P65 431 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 SERINC2Q96SA4 455 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 REXO4Q9GZR2 422 aaKnown RBP12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 COPS7BQ9H9Q2 264 aaPredicted RBP12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 COPS7AQ9UBW8 275 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 VTI1BQ9UEU0 232 aa12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.92□□□□□ -0.34
SMARCA4-206ENST00000538456 KIAA1549Q9HCM3 1950 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 KDM4EB2RXH2 506 aaPredicted RBP12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 DVL2O14641 736 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 CTNSO60931 367 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 H2AFYO75367 372 aaKnown RBP12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 LRATO95237 230 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 C1GALT1C1LP0DN25 315 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 GNAZP19086 355 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 MTTPP55157 894 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 TMEM198Q66K66 360 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 FAM45BPQ6NSW5 357 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 SLCO4C1Q6ZQN7 724 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 CNTN4Q8IWV2 1026 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 FBXW8Q8N3Y1 598 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 TNIP2Q8NFZ5 429 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 OR2L5Q8NG80 312 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 OR8K3Q8NH51 312 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 FAM45AQ8TCE6 357 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 CERS2Q96G23 380 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 C18orf12Q96KH6 178 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 JSRP1Q96MG2 331 aaPredicted RBP12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 BOKQ9UMX3 212 aaPredicted RBP12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 DAPP1Q9UN19 280 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 VWA7Q9Y334 891 aa12.91□□□□□ -0.34
SMARCA4-206ENST00000538456 C15orf38-AP3S2A0A0A6YYH1 394 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 SYNDIG1LA6NDD5 238 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 TUBAL3A6NHL2 446 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ANKDD1BA6NHY2 528 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 LRRC3CA6NJW4 275 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ETHE1O95571 254 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 TBX6O95947 436 aaPredicted RBP12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 INHBBP09529 407 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ZNF37AP17032 561 aaPredicted RBP12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 RCN2Q14257 317 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ZNF460Q14592 562 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 EFTUD2Q15029 972 aaKnown RBP eCLIP12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 SPANXN3Q5MJ09 141 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 SLC22A10Q63ZE4 541 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ABHD17CQ6PCB6 329 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 CCDC137Q6PK04 289 aaKnown RBP12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ADGRD1Q6QNK2 874 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 CLEC9AQ6UXN8 241 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 FRA10AC1Q70Z53 315 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 VN1R5Q7Z5H4 357 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 PPIL6Q8IXY8 311 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 LIX1Q8N485 282 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 FAM13CQ8NE31 585 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 NEIL3Q8TAT5 605 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ZNF721Q8TF20 911 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 KIAA1191Q96A73 305 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 MS4A14Q96JA4 679 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 ZFP64Q9NPA5 681 aa12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 MTRF1LQ9UGC7 380 aaKnown RBP12.9□□□□□ -0.34
SMARCA4-206ENST00000538456 NCF1BA6NI72 391 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 NCF1CA8MVU1 366 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 CLEC3AO75596 197 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 TTC4O95801 387 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 NCF1P14598 390 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 DAZAP2Q15038 168 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 MPEG1Q2M385 716 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 ZNF791Q3KP31 576 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 ADPRMQ3LIE5 342 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 ACSF3Q4G176 576 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 MSS51Q4VC12 460 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 PIGGQ5H8A4 983 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 HP1BP3Q5SSJ5 553 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 TEDDM1Q5T9Z0 273 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 RNASEH2BQ5TBB1 312 aaKnown RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 CHSY3Q70JA7 882 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 IGDCC3Q8IVU1 814 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 C9orf40Q8IXQ3 194 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 KRT78Q8N1N4 520 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 LINC01560Q8TB33 94 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 SLC22A8Q8TCC7 542 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 PDLIM5Q96HC4 596 aaKnown RBP12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 F2RL3Q96RI0 385 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 PRM3Q9NNZ6 103 aa12.89□□□□□ -0.35
SMARCA4-206ENST00000538456 DOCK7Q96N67 2140 aa12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 TLN2Q9Y4G6 2542 aa12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 EEF1E1-BLOC1S5C9J1V9 151 aa12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 EEF1E1O43324 174 aaKnown RBP12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 COX7A2P14406 83 aa12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 GDF1P27539 372 aa12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 GSTM2P28161 218 aa12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 HOXC12P31275 282 aa12.88□□□□□ -0.35
SMARCA4-206ENST00000538456 HPDP32754 393 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms