RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710		A0A087X002	238 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	SH3PXD2B	A1X283	911 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	YJEFN3	A6XGL0	299 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	CHEK1	O14757	476 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	INPP4B	O15327	924 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	SSX5	O60225	188 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	KIAA0513	O60268	411 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	ANXA9	O76027	345 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	TXNDC12	O95881	172 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	TGFA	P01135	160 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	SERPINF2	P08697	491 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	MYOG	P15173	224 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	CCNA2	P20248	432 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	ACADSB	P45954	432 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	FHIT	P49789	147 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	PEX3	P56589	373 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	HSPA14	Q0VDF9	509 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	BTG3	Q14201	252 aa	Predicted RBP	4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	MEF2D	Q14814	521 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	KARS	Q15046	597 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	KRTAP24-1	Q3LI83	254 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	LCLAT1	Q6UWP7	414 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	FRRS1	Q6ZNA5	592 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	BNIPL	Q7Z465	357 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	ZNF329	Q86UD4	541 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	C17orf64	Q86WR6	236 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	WDR49	Q8IV35	697 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	ELMOD2	Q8IZ81	293 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	ADAD2	Q8NCV1	583 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	MRPL24	Q96A35	216 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	GPR137	Q96N19	417 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	RBM4	Q9BWF3	364 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	SIRPD	Q9H106	197 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	HSD3B7	Q9H2F3	369 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	PLEKHA3	Q9HB20	300 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	TECR	Q9NZ01	308 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	VPS54	Q9P1Q0	977 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	ERVK-18	Q9QC07	812 aa		4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	EXOG	Q9Y2C4	368 aa	Known RBP	4.6	□□□□□ -1.67
PRKDC-208	ENST00000536710	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710		A0A0U1RRA0	63 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	RASGRF2	O14827	1237 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	TLX2	O43763	284 aa	Predicted RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	EDIL3	O43854	480 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	NME2P1	O60361	137 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	OR6B1	O95007	311 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	SYNGR4	O95473	234 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	PTMA	P06454	111 aa	Known RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	PROS1	P07225	676 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	GNS	P15586	552 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	ARF4	P18085	180 aa	Predicted RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	GLRA1	P23415	457 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	ACP1	P24666	158 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	ALDH3B1	P43353	468 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	TNFRSF4	P43489	277 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	CAMLG	P49069	296 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	LIMK2	P53671	638 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	NLRP11	P59045	1033 aa	Known RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	ZNF177	Q13360	481 aa	Predicted RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	EXOSC7	Q15024	291 aa	Known RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	TTC31	Q49AM3	519 aa	Predicted RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	DCAF12	Q5T6F0	453 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	ARID2	Q68CP9	1835 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	HIST2H2AA3	Q6FI13	130 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	CDC42EP5	Q6NZY7	148 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710		Q6ZRG5	221 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	RBM43	Q6ZSC3	357 aa	Known RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	PARP8	Q8N3A8	854 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	TCP11	Q8WWU5	503 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	ATXN7L3B	Q96GX2	97 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	COQ7	Q99807	217 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	OVOL2	Q9BRP0	275 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	PINK1	Q9BXM7	581 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	NACA2	Q9H009	215 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	ACTR3B	Q9P1U1	418 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	TMEM181	Q9P2C4	612 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	CLIP2	Q9UDT6	1046 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	DIMT1	Q9UNQ2	313 aa	Known RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	MTF2	Q9Y483	593 aa	Predicted RBP	4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	WIPI2	Q9Y4P8	454 aa		4.59	□□□□□ -1.67
PRKDC-208	ENST00000536710	OR5H15	A6NDH6	313 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710		K7EQD1	137 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	TXNL1	O43396	289 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	TNFSF12	O43508	249 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	ZG16	O60844	167 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	LRP3	O75074	770 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	CXCL10	P02778	98 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	MBL2	P11226	248 aa	Predicted RBP	4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	CD1D	P15813	335 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	RPA1	P27694	616 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	AKT2	P31751	481 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	RPL9	P32969	192 aa	Known RBP	4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	ID1	P41134	155 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	CD86	P42081	329 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	CCL11	P51671	97 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	ATP12A	P54707	1039 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	SLC26A5	P58743	744 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	ERVK-16	P61578	105 aa		4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	MFGE8	Q08431	387 aa	Predicted RBP	4.58	□□□□□ -1.68
PRKDC-208	ENST00000536710	KIAA0141	Q14154	515 aa	Predicted RBP	4.58	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms