RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CLCN4P51793 760 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 EVCP57679 992 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 GFPT1Q06210 699 aaPredicted RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 SLC3A1Q07837 685 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 CD300CQ08708 224 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 GAMTQ14353 236 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 PM20D1Q6GTS8 502 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 ZNF770Q6IQ21 691 aaPredicted RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 NEK5Q6P3R8 708 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 CD164L2Q6UWJ8 174 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 TMEM126BQ8IUX1 230 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 ZNF444Q8N0Y2 327 aaPredicted RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 BATF2Q8N1L9 274 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 TEX26Q8N6G2 289 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 TMEM99Q8N816 258 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 URGCPQ8TCY9 931 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 TAF4BQ92750 862 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 TOMM40LQ969M1 308 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 C11orf52Q96A22 123 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 ZNF559Q9BR84 538 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 PAPOLGQ9BWT3 736 aaKnown RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 TEX13AQ9BXU3 409 aaPredicted RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 TMEM245Q9H330 911 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 RPF1Q9H9Y2 349 aaKnown RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 PIN4Q9Y237 131 aaKnown RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 EXOC6BQ9Y2D4 811 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 MRPS18CQ9Y3D5 142 aaKnown RBP3.73□□□□□ -1.81
CD44-223ENST00000526553 TEX264Q9Y6I9 313 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 NCAPD3P42695 1498 aa3.73□□□□□ -1.81
CD44-223ENST00000526553 C5orf51A6NDU8 294 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 SRRM5B3KS81 715 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 E5RGE8 158 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 HSF2BPO75031 334 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 GRAP2O75791 330 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 STAM2O75886 525 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 MMP10P09238 476 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 CCDC192P0DO97 292 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 CPA3P15088 417 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 ARF4P18085 180 aaPredicted RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 AHCYP23526 432 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 CD86P42081 329 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 ZFP36L2P47974 494 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 LIMK2P53671 638 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 RPP38P78345 283 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 ABRQ12979 859 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 LCP2Q13094 533 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 PDE7AQ13946 482 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 ARMCX4Q5H9R4 360 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 B3GLCTQ6Y288 498 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 C15orf52Q6ZUT6 534 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 TRMT11Q7Z4G4 463 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 ADCK1Q86TW2 530 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 CROCCP3Q8IVE0 287 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 SERPINA12Q8IW75 414 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 DND1Q8IYX4 353 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 LINC00612Q8N6U2 182 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 CLEC1AQ8NC01 280 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 CNNM3Q8NE01 707 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 EXOC6Q8TAG9 804 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 KIAA1524Q8TCG1 905 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 SPPL2AQ8TCT8 520 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 RNASE8Q8TDE3 154 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 TMEM186Q96B77 213 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 EPSTI1Q96J88 318 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 PRMT1Q99873 361 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 ZNF577Q9BSK1 485 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 XPO4Q9C0E2 1151 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 HSD3B7Q9H2F3 369 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 FNDC4Q9H6D8 234 aaPredicted RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 ZDHHC6Q9H6R6 413 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 FETUBQ9UGM5 382 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 UBQLN2Q9UHD9 624 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 RARRES3Q9UL19 164 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 SATB2Q9UPW6 733 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 NSG2Q9Y328 171 aa3.72□□□□□ -1.81
CD44-223ENST00000526553 STRAPQ9Y3F4 350 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 DHX29Q7Z478 1369 aaKnown RBP3.72□□□□□ -1.81
CD44-223ENST00000526553 HCFC1P51610 2035 aa3.71□□□□□ -1.81
CD44-223ENST00000526553 TMEM129A0AVI4 362 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ANKDD1BA6NHY2 528 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 M0R296 226 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 TXNL1O43396 289 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 TNFSF12O43508 249 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 LRCH4O75427 683 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 GAS8O95995 478 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 MT-ND2P03891 347 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 FOLR2P14207 255 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ZNF18P17022 549 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 GOT1P17174 413 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ASMTP46597 345 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ATXN3P54252 364 aaPredicted RBP3.71□□□□□ -1.82
CD44-223ENST00000526553 ZFP36L1Q07352 338 aaKnown RBP3.71□□□□□ -1.82
CD44-223ENST00000526553 PDK1Q15118 436 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 INAQ16352 499 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ZNF542PQ5EBM4 170 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 SLC25A30Q5SVS4 291 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 Q6ZR54 194 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 C5orf24Q7Z6I8 188 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ASPGQ86U10 573 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms