RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CTAGE8P0CG41 777 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 BUD31P41223 144 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 GPR143P51810 404 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 ID2Q02363 134 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 PCBP2Q15366 365 aaKnown RBP eCLIP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 METTL2BQ6P1Q9 378 aaKnown RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 XKRXQ6PP77 449 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 CYP20A1Q6UW02 462 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 IL20RBQ6UXL0 311 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 BNC2Q6ZN30 1099 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 Q6ZPB1 254 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 GPR180Q86V85 440 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF227Q86WZ6 799 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 RELL1Q8IUW5 271 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 CTAGE4Q8IX94 777 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 PTPMT1Q8WUK0 201 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 TANKQ92844 425 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 MARVELD3Q96A59 401 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 SCYL1Q96KG9 808 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 FMO2Q99518 471 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 RPF2Q9H7B2 306 aaKnown RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 IPPKQ9H8X2 491 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 LIN28AQ9H9Z2 209 aaKnown RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 CHST11Q9NPF2 352 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 DMRT3Q9NQL9 472 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF223Q9UK11 482 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-215ENST00000515516 TMCO1Q9UM00 188 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF835Q9Y2P0 537 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 TSC22D4Q9Y3Q8 395 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 CLDN16Q9Y5I7 305 aa12.71□□□□□ -0.37
TCOF1-215ENST00000515516 UTP20O75691 2785 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 HIVEP3Q5T1R4 2406 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 HMX2A2RU54 273 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 H0YIV9 168 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 WWP2O00308 870 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 KLK8O60259 260 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 PRKNO60260 465 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 CDC40O60508 579 aaKnown RBP eCLIP12.7□□□□□ -0.389e-7■■■□□ 18.5
TCOF1-215ENST00000515516 SMIM24O75264 130 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 ALDOAP04075 364 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 STT3AP46977 705 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 ARFIP1P53367 373 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 GPR85P60893 370 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 RPS13P62277 151 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 RNF4P78317 190 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 PLGLB1Q02325 96 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 CPSF6Q16630 551 aaKnown RBP eCLIP12.7□□□□□ -0.383e-9■□□□□ 9
TCOF1-215ENST00000515516 TSNAXIP1Q2TAA8 658 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 GLE1Q53GS7 698 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 LGSNQ5TDP6 509 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 PAOXQ6QHF9 649 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 MDGA2Q7Z553 956 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 GOLGA7Q7Z5G4 137 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 OR4N5Q8IXE1 308 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 ZCCHC7Q8N3Z6 543 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 OR8K3Q8NH51 312 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 SLC2A12Q8TD20 617 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 SLC44A1Q8WWI5 657 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 SREK1Q8WXA9 508 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 ANKRD9Q96BM1 317 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 ART5Q96L15 291 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 SORBS1Q9BX66 1292 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 CDC42EP4Q9H3Q1 356 aaKnown RBP12.7□□□□□ -0.38
TCOF1-215ENST00000515516 WDR41Q9HAD4 459 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 MEMO1Q9Y316 297 aa12.7□□□□□ -0.38
TCOF1-215ENST00000515516 LRRC14BA6NHZ5 514 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 POC1B-GALNT4F8VUJ3 575 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 ACOT7O00154 380 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PLPP1O14494 284 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 HS6ST1O60243 411 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 OR10H2O60403 315 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 OR6B1O95007 311 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 CLDN9O95484 217 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 AGAP20933 346 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 CNTFP26441 200 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 HTR1EP28566 365 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PTGS2P35354 604 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 RFC3P40938 356 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 CCNG1P51959 295 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 HK2P52789 917 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 HSF1Q00613 529 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PLIN5Q00G26 463 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 TNFRSF17Q02223 184 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 RNFT1Q5M7Z0 435 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 TTC19Q6DKK2 380 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-215ENST00000515516 OPN5Q6U736 354 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 C16orf47Q6ZP98 133 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-215ENST00000515516 RTL4Q6ZR62 310 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 RNF175Q8N4F7 328 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PTGR2Q8N8N7 351 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PSD4Q8NDX1 1056 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 C16orf52Q8NHV5 167 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 AGAP11Q8TF27 550 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PHF21BQ96EK2 531 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 GPR78Q96P69 363 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 RASL10BQ96S79 203 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PAFAH2Q99487 392 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 PELOQ9BRX2 385 aaKnown RBP12.69□□□□□ -0.38
TCOF1-215ENST00000515516 FUT8Q9BYC5 575 aa12.69□□□□□ -0.38
TCOF1-215ENST00000515516 NOL11Q9H8H0 719 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms