RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FLNCQ14315 2725 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 GCN1Q92616 2671 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 LOC105369274A0A096LPK9 316 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 IGHV3-20A0A0C4DH32 117 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 LOC102723532A0A0G2JNH3 316 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 EXOC1LA0A1B0GW35 172 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 METTL21EPA6NDL7 271 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 OR5K3A6NET4 321 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 CPNE3O75131 537 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ULK1O75385 1050 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 GBAP04062 536 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 PRG2P13727 222 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TPSB2P20231 275 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 PTGER1P34995 402 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 HSPA7P48741 367 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 CCNG1P51959 295 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 PLA2G16P53816 162 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 DCDC1P59894 354 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 IL2P60568 153 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 IRF9Q00978 393 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ACY1Q03154 408 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 BTN1A1Q13410 526 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TPSAB1Q15661 275 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TNFAIP8L3Q5GJ75 292 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 BROXQ5VW32 411 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 ATG16L1Q676U5 607 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SCIMPQ6UWF3 145 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 TIPARPQ7Z3E1 657 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 CEP97Q8IW35 865 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 OR4N4Q8N0Y3 316 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 MCOLN3Q8TDD5 553 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SECISBP2Q96T21 854 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 POT1Q9NUX5 634 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 PCYOX1Q9UHG3 505 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SH3BGRL2Q9UJC5 107 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC22A14Q9Y267 594 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 PCDHGB2Q9Y5G2 931 aa7.52□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC16A5O15375 505 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 PRPF4O43172 522 aaKnown RBP eCLIP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 OR1F1O43749 312 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 NAGAP17050 411 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 DDCP20711 480 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 F8A1P23610 371 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 CXCR2P25025 360 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 MAPK12P53778 367 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 CARD18P57730 90 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 MORF4L2Q15014 288 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 Q5PR19 223 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 PDPK2PQ6A1A2 396 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 FRMPD2BQ6IN97 320 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 TBC1D21Q8IYX1 336 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 RAB42Q8N4Z0 105 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 MARC2Q969Z3 335 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 TADA1Q96BN2 335 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 MMABQ96EY8 250 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 EGLN2Q96KS0 407 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 BIRC8Q96P09 236 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 C17orf62Q9BQA9 187 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 KIFC1Q9BW19 673 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 OR52A5Q9H2C5 316 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 HCN3Q9P1Z3 774 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 IFT80Q9P2H3 777 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 TRPC4Q9UBN4 977 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 PTRH2Q9Y3E5 179 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 POLQO75417 2590 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 A0A0A6YYC8 382 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM237BA0A1B0GVD1 139 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF839A8K0R7 811 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 I3L1I5 382 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 PSMD12O00232 456 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 SGCEO43556 437 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 PRKNO60260 465 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 WFS1O76024 890 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 SNX4O95219 450 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 LTA4HP09960 611 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 EPB42P16452 691 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 POU1F1P28069 291 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 CASP9P55211 416 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 CDH13P55290 713 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 C21orf58P58505 322 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 ACTR3P61158 418 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 ID2Q02363 134 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 MGAT5Q09328 741 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 HKDC1Q2TB90 917 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 VWA2Q5GFL6 755 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 GPR107Q5VW38 600 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 HDDC2Q7Z4H3 204 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 DPPA2Q7Z7J5 298 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 PDZD3Q86UT5 571 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 C10orf53Q8N6V4 93 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM181AQ8N9Y4 354 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 LINC01555Q8NAE3 123 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 TRPV3Q8NET8 790 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM174AQ8TBP5 190 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 TMIGD2Q96BF3 282 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 MTBPQ96DY7 904 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 CDK15Q96Q40 435 aa7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 CCNL2Q96S94 520 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-219ENST00000514096 PKP4Q99569 1192 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms