RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 VTI1BQ9UEU0 232 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 FOXD3Q9UJU5 478 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 GUCA1BQ9UMX6 200 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 LRIT2A6NDA9 550 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 FAM171A2A8MVW0 826 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 H7C1Q1 480 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 SMAD7O15105 426 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 CTNSO60931 367 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 LRATO95237 230 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 MLNP12872 115 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 CERS1P27544 350 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 LIM2P55344 173 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 ID2Q02363 134 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 STX4Q12846 297 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 BBS9Q3SYG4 887 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 PIGGQ5H8A4 983 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 SLC22A10Q63ZE4 541 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 CSPG4Q6UVK1 2322 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 MAATS1Q7Z4T9 603 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 KIF18BQ86Y91 864 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 TMEM139Q8IV31 216 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 TXLNBQ8N3L3 684 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 LIX1Q8N485 282 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 OR8K3Q8NH51 312 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 NANOS1Q8WY41 292 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 RUNDC3BQ96NL0 473 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 PROK2Q9HC23 129 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 ZFP64Q9NPA5 681 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 ZNF629Q9UEG4 869 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 ZKSCAN5Q9Y2L8 839 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 RTTNQ86VV8 2226 aa18.7■□□□□ 0.58
SQSTM1-215ENST00000514093 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 C15orf38-AP3S2A0A0A6YYH1 394 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 LRRC3CA6NJW4 275 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 LDB3O75112 727 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 ETHE1O95571 254 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 IL2RAP01589 272 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 KRT14P02533 472 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 HRGP04196 525 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 ZNF75DP51815 510 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 PDAP1Q13442 181 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 ZNF791Q3KP31 576 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 CXXC5Q7LFL8 322 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 CXorf67Q86X51 503 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 LRRC25Q8N386 305 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 COX4I2Q96KJ9 171 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 SIGLEC10Q96LC7 697 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 XAB2Q9HCS7 855 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 SH2D2AQ9NP31 389 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 ACKR4Q9NPB9 350 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 BOKQ9UMX3 212 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 DAPP1Q9UN19 280 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 PCDHGB3Q9Y5G1 929 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 KCNE2Q9Y6J6 123 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 KIAA1549Q9HCM3 1950 aa18.69■□□□□ 0.58
SQSTM1-215ENST00000514093 AHRRA9YTQ3 701 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 EEF1E1-BLOC1S5C9J1V9 151 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 EEF1E1O43324 174 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 AHSGP02765 367 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 DUSP8Q13202 625 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 Q5PR19 223 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 SPATA3Q8NHX4 192 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 ZNF721Q8TF20 911 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 SLC17A6Q9P2U8 582 aa18.68■□□□□ 0.58
SQSTM1-215ENST00000514093 FBN1P35555 2871 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 ARHGEF9O43307 516 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 TBX6O95947 436 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 C1GALT1C1LP0DN25 315 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 TIMP3P35625 211 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 GDF5P43026 501 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 SLBPQ14493 270 aaKnown RBP eCLIP18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 MPEG1Q2M385 716 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 C18orf21Q32NC0 220 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 ADNP2Q6IQ32 1131 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 SBSNQ6UWP8 590 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 TMIGD1Q6UXZ0 262 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 LACC1Q8IV20 430 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 P3H2Q8IVL5 708 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 MCUQ8NE86 351 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 OR2L5Q8NG80 312 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 DOK4Q8TEW6 326 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 PAQR8Q8TEZ7 354 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 SERINC2Q96SA4 455 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 TIMP4Q99727 224 aa18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 WDR83Q9BRX9 315 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 REXO4Q9GZR2 422 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-215ENST00000514093 A0A088AWK7 358 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 INAFM1C9JVW0 142 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 H2AFYO75367 372 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 ENO2P09104 434 aaPredicted RBP18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 ZNF10P21506 573 aaPredicted RBP18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 MAGEA3P43357 314 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 CRYZQ08257 329 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 TRIM40Q6P9F5 258 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 ABHD17CQ6PCB6 329 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 LYPD8Q6UX82 237 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 GPATCH11Q8N954 259 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 FAM13CQ8NE31 585 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 OR10G3Q8NGC4 313 aa18.66■□□□□ 0.58
SQSTM1-215ENST00000514093 MAIP1Q8WWC4 291 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms