RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LDB3O75112 727 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 LRATO95237 230 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 RECKO95980 971 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 PRR35P0CG20 571 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 TROVE2P10155 538 aaKnown RBP eCLIP11.19□□□□□ -0.623e-6■■□□□ 11.8
CUX1-210ENST00000497815 ALOX15P16050 662 aaPredicted RBP11.19□□□□□ -0.62
CUX1-210ENST00000497815 LSP1P33241 339 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 SEC24CP53992 1094 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 TRA2BP62995 288 aaKnown RBP11.19□□□□□ -0.62
CUX1-210ENST00000497815 ERVK-8P63133 956 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 RHAGQ02094 409 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 EMX2Q04743 252 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 C2orf80Q0P641 193 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 MAD2L1Q13257 205 aaPredicted RBP11.19□□□□□ -0.62
CUX1-210ENST00000497815 NSDHLQ15738 373 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 CGB2Q6NT52 195 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 CCDC81Q6ZN84 652 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 LANCL3Q6ZV70 420 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 ACAD11Q709F0 780 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 LARP4Q71RC2 724 aaKnown RBP eCLIP11.19□□□□□ -0.629e-6■■■■□ 21.5
CUX1-210ENST00000497815 ZNF595Q8IYB9 648 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 TMEM132CQ8N3T6 1108 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 METTL21AQ8WXB1 218 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 C8orf44Q96CB5 159 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 CHMP6Q96FZ7 201 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 SLC45A3Q96JT2 553 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 MARK4Q96L34 752 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 FCRL1Q96LA6 429 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 FAIM2Q9BWQ8 316 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 TRIM55Q9BYV6 548 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 FAM107BQ9H098 131 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 NECTIN3Q9NQS3 549 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 PRDM9Q9NQV7 894 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 NOP53Q9NZM5 478 aaKnown RBP11.19□□□□□ -0.62
CUX1-210ENST00000497815 C5AR2Q9P296 337 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 HEY2Q9UBP5 337 aa11.19□□□□□ -0.62
CUX1-210ENST00000497815 FER1L5A0AVI2 2057 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 C1orf226A1L170 272 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 TGFBR3LH3BV60 316 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 EFSO43281 561 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 FGF17O60258 216 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 CTNSO60931 367 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 ALOX12BO75342 701 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 TGDSO95455 350 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 C8orf89P0DMQ9 161 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 G6PDP11413 515 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 DIO3P55073 304 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 NME5P56597 212 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 HSD17B7P56937 341 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 FOLH1Q04609 750 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 TLE3Q04726 772 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 EEF1A2Q05639 463 aaKnown RBP11.18□□□□□ -0.62
CUX1-210ENST00000497815 STX4Q12846 297 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 SSPNQ14714 243 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 PTGR1Q14914 329 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 LSM12Q3MHD2 195 aaKnown RBP11.18□□□□□ -0.62
CUX1-210ENST00000497815 TMEM198Q66K66 360 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 OR52E8Q6IFG1 317 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 FAM180BQ6P0A1 224 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 PPP1R32Q7Z5V6 425 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 KDF1Q8NAX2 398 aaPredicted RBP11.18□□□□□ -0.62
CUX1-210ENST00000497815 ZSCAN1Q8NBB4 408 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 ACTRT2Q8TDY3 377 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 MAELQ96JY0 434 aaKnown RBP11.18□□□□□ -0.62
CUX1-210ENST00000497815 RILPQ96NA2 401 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 ZNF317Q96PQ6 595 aaPredicted RBP11.18□□□□□ -0.62
CUX1-210ENST00000497815 TMEM120AQ9BXJ8 343 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 FAM117AQ9C073 453 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 RABEP2Q9H5N1 569 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 CPNE5Q9HCH3 593 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 MYNNQ9NPC7 610 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 TCF7L2Q9NQB0 619 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 MIEF1Q9NQG6 463 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 SEMA3GQ9NS98 782 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 PCDHA9Q9Y5H5 950 aa11.18□□□□□ -0.62
CUX1-210ENST00000497815 IGHV3-20A0A0C4DH32 117 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 BLACEA4D250 179 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ZNF891A8MT65 544 aaPredicted RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 A8MUA0 341 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 E9PBE3 544 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 KLHL41O60662 606 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ERAL1O75616 437 aaKnown RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 IGHEP01854 428 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 FURINP09958 794 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ALDOCP09972 364 aaKnown RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 PRPS2P11908 318 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 MMP11P24347 488 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 PPP2R1BP30154 601 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ACTN3Q08043 901 aaPredicted RBP11.17□□□□□ -0.62
CUX1-210ENST00000497815 HEPACAMQ14CZ8 416 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 UGT8Q16880 541 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 SMU1Q2TAY7 513 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ZNF750Q32MQ0 723 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 FAM71E1Q6IPT2 247 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ANKRD26P1Q6NSI1 321 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 SLC48A1Q6P1K1 146 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 QSOX2Q6ZRP7 698 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 IKBIPQ70UQ0 350 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 SPATA19Q7Z5L4 167 aa11.17□□□□□ -0.62
CUX1-210ENST00000497815 ANKRD37Q7Z713 158 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms