RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CRB2Q5IJ48 1285 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 DEPDC1Q5TB30 811 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 HLA-DQA1Q5Y7H0 255 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 JMJD6Q6NYC1 403 aaPredicted RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 ABHD17CQ6PCB6 329 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 KIRREL2Q6UWL6 708 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ISLR2Q6UXK2 745 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 LRIG3Q6UXM1 1119 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 QSOX2Q6ZRP7 698 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 RPS27LQ71UM5 84 aaKnown RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 PPP1R32Q7Z5V6 425 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 TRABD2AQ86V40 505 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 GPR180Q86V85 440 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 TRIM42Q8IWZ5 723 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 CA13Q8N1Q1 262 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 TMEM132CQ8N3T6 1108 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 SIRT6Q8N6T7 355 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 GBP7Q8N8V2 638 aaPredicted RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 ACOT4Q8N9L9 421 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 L3MBTL4Q8NA19 623 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 FDCSPQ8NFU4 85 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 MYRIPQ8NFW9 859 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 OR11G2Q8NGC1 345 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 AGR3Q8TD06 166 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 MGARPQ8TDB4 240 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 TCP10LQ8TDR4 215 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ZNF483Q8TF39 744 aaPredicted RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 NANOS1Q8WY41 292 aaKnown RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 TMEM125Q96AQ2 219 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ZBTB9Q96C00 473 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 WDR34Q96EX3 536 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ZNF354BQ96LW1 612 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 GPR78Q96P69 363 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ZIM3Q96PE6 472 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 PELOQ9BRX2 385 aaKnown RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 TRMOQ9BU70 441 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 TRIM55Q9BYV6 548 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 DEFB126Q9BYW3 111 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 SHCBP1LQ9BZQ2 653 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 RPF2Q9H7B2 306 aaKnown RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 BRF2Q9HAW0 419 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 LYRM4Q9HD34 91 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 MIEF1Q9NQG6 463 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 SLC22A11Q9NSA0 550 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 C5AR2Q9P296 337 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 VPS29Q9UBQ0 182 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 LGALS13Q9UHV8 139 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 DAPP1Q9UN19 280 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ENTPD4Q9Y227 616 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ASB1Q9Y576 335 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 PCDHGA9Q9Y5G4 932 aaKnown RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 ZNF780BQ9Y6R6 833 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 FAM208BQ5VWN6 2430 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 NUP210LQ5VU65 1888 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 USP24Q9UPU5 2620 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ASPMQ8IZT6 3477 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 IGLV3-12A0A075B6K2 115 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 IGHV1-45A0A0A0MS14 117 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 IGHV3-20A0A0C4DH32 117 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 SLC28A1O00337 649 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 SOCS6O14544 535 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 OR7A17O14581 309 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 TERTO14746 1132 aaKnown RBP7.55□□□□□ -1.2
USP40-216ENST00000485943 TM9SF1O15321 606 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 VPS4BO75351 444 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ERAL1O75616 437 aaKnown RBP7.55□□□□□ -1.2
USP40-216ENST00000485943 SEMA3DO95025 777 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 MED26O95402 600 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ONECUT2O95948 504 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 PDYNP01213 254 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 PROCP04070 461 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 SERPINA7P05543 415 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 FAM58BPP0C7Q3 252 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 EDN3P14138 238 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 CD22P20273 847 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 MAOAP21397 527 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ATP5A1P25705 553 aaKnown RBP7.55□□□□□ -1.2
USP40-216ENST00000485943 CLCN2P51788 898 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ARFIP1P53367 373 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 LIM2P55344 173 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 CSTF3Q12996 717 aaKnown RBP7.55□□□□□ -1.2
USP40-216ENST00000485943 MEP1AQ16819 746 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ZXDCQ2QGD7 858 aaPredicted RBP7.55□□□□□ -1.2
USP40-216ENST00000485943 LINC00303Q3SY05 128 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 GGTA1PQ4G0N0 100 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 HSP90B2PQ58FF3 399 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 LANCL3Q6ZV70 420 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 HDXQ7Z353 690 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 ANKRD37Q7Z713 158 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 PDSS2Q86YH6 399 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 C10orf107Q8IVU9 208 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 IQCKQ8N0W5 287 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 VWA5B2Q8N398 1253 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 TMEM156Q8N614 296 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 DNAJB14Q8TBM8 379 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 BRIX1Q8TDN6 353 aaKnown RBP7.55□□□□□ -1.2
USP40-216ENST00000485943 ADAMTS17Q8TE56 1095 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 TANKQ92844 425 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 L3HYPDHQ96EM0 354 aa7.55□□□□□ -1.2
USP40-216ENST00000485943 PKNOX2Q96KN3 472 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms