RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LYPLAL1Q5VWZ2 237 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 RAPH1Q70E73 1250 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 SPATA19Q7Z5L4 167 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 VASH2Q86V25 355 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 ANKRD46Q86W74 232 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 CLEC1AQ8NC01 280 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.22□□□□□ -2.05
VPS50-216ENST00000484954 CDHR1Q96JP9 859 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 LCE3DQ9BYE3 92 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 MRPL17Q9NRX2 175 aaKnown RBP2.22□□□□□ -2.05
VPS50-216ENST00000484954 CLIC5Q9NZA1 410 aa2.22□□□□□ -2.05
VPS50-216ENST00000484954 PFASO15067 1338 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 CFAP65Q6ZU64 1925 aaKnown RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 HTR3EA5X5Y0 456 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 H0YIG0 161 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 MCF2LO15068 1137 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 CTDSPLO15194 276 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 CSO75390 466 aaKnown RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 RPN1P04843 607 aaKnown RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 VIMP08670 466 aaKnown RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 SKILP12757 684 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 FOSL2P15408 326 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 MDH2P40926 338 aaKnown RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 MEOX2P50222 304 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 RPL27P61353 136 aaKnown RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 EIF4EBP2Q13542 120 aaPredicted RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 TTC31Q49AM3 519 aaPredicted RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 C9orf129Q5T035 196 aaKnown RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 WDR25Q64LD2 544 aaPredicted RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 SIGLEC15Q6ZMC9 328 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 WDR49Q8IV35 697 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 TIGD4Q8IY51 512 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 OR8H2Q8N162 312 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 SAMD12Q8N8I0 201 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 KIAA0895Q8NCT3 520 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 ZNF671Q8TAW3 534 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 ZBED6CLQ96FA7 236 aaPredicted RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 SIGLEC12Q96PQ1 595 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 VNN3Q9NY84 501 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 ZNF319Q9P2F9 582 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 NFKBIL1Q9UBC1 381 aaPredicted RBP2.21□□□□□ -2.06
VPS50-216ENST00000484954 ANAPC5Q9UJX4 755 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 RNF24Q9Y225 148 aa2.21□□□□□ -2.06
VPS50-216ENST00000484954 ILVBLA1L0T0 632 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 GTPBP10A4D1E9 387 aaKnown RBP2.2□□□□□ -2.06
VPS50-216ENST00000484954 CCT8L1PA6NM43 557 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 FIBPO43427 364 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 PLOD3O60568 738 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 DUSP11O75319 330 aaKnown RBP2.2□□□□□ -2.06
VPS50-216ENST00000484954 ODC1P11926 461 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 MGMTP16455 207 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 GDF1P27539 372 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 OR1D2P34982 312 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 TNFRSF4P43489 277 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 KCNJ1P48048 391 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 CXCL6P80162 114 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 TGIF1Q15583 401 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 GSG1Q2KHT4 349 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 ZNF544Q6NX49 715 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 PODNL1Q6PEZ8 512 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 SLFN11Q7Z7L1 901 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 PRR22Q8IZ63 422 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 ZNF525Q8N782 197 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 UXS1Q8NBZ7 420 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 RNF149Q8NC42 400 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 RAB3CQ96E17 227 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 ZNF285Q96NJ3 590 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 FERMT1Q9BQL6 677 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 ATG101Q9BSB4 218 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 CXXC4Q9H2H0 198 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.2□□□□□ -2.06
VPS50-216ENST00000484954 MOKQ9UQ07 419 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 TTLL3Q9Y4R7 772 aa2.2□□□□□ -2.06
VPS50-216ENST00000484954 ARHGEF37A1IGU5 675 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 CLN5O75503 358 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 GRAP2O75791 330 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 OR6A2O95222 327 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 ELK1P19419 428 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 BDNFP23560 247 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 NPBWR1P48145 328 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 NUCB1Q02818 461 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 PAX2Q02962 417 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 C14orf28Q4W4Y0 310 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 SPOUT1Q5T280 376 aaKnown RBP2.19□□□□□ -2.06
VPS50-216ENST00000484954 DCAF12Q5T6F0 453 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 LIPJQ5W064 366 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 CAPN13Q6MZZ7 669 aaPredicted RBP2.19□□□□□ -2.06
VPS50-216ENST00000484954 CAVIN1Q6NZI2 390 aaKnown RBP2.19□□□□□ -2.06
VPS50-216ENST00000484954 PHLDB2Q86SQ0 1253 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 DZIP1Q86YF9 867 aaKnown RBP2.19□□□□□ -2.06
VPS50-216ENST00000484954 FBXO16Q8IX29 292 aaPredicted RBP2.19□□□□□ -2.06
VPS50-216ENST00000484954 UBQLNLQ8IYU4 475 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 NME8Q8N427 588 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 OR1K1Q8NGR3 316 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 ZNF564Q8TBZ8 553 aaPredicted RBP2.19□□□□□ -2.06
VPS50-216ENST00000484954 TBCKQ8TEA7 893 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 PCED1BQ96HM7 432 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 MAPKAP1Q9BPZ7 522 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 PAXXQ9BUH6 204 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 TRIM7Q9C029 511 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms