RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 WDR20Q8TBZ3 569 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 DCAKDQ8WVC6 231 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 UCN3Q969E3 161 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 PAFAH2Q99487 392 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 ROGDIQ9GZN7 287 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 VPS11Q9H270 941 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 ZBTB26Q9HCK0 441 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 CPSF2Q9P2I0 782 aaKnown RBP13.1□□□□□ -0.31
UPF3A-204ENST00000475218 ATG4BQ9Y4P1 393 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 PDZD2O15018 2839 aa13.1□□□□□ -0.31
UPF3A-204ENST00000475218 UQCRHLA0A096LP55 91 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 A0A0G2JMM0 328 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 A0A1B0GTL3 188 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 A0A1W2PPB8 328 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 A0A1W2PRS3 328 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 KIR3DP1A8MWS1 328 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 HRKO00198 91 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ADAM10O14672 748 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 TMPRSS11DO60235 418 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 OR6B1O95007 311 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 IFNA16P05015 189 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 PRF1P14222 555 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 PHBP35232 272 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 SSR2P43308 183 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 PIK3CGP48736 1102 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 MEOX1P50221 254 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 NEK2P51955 445 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 HK2P52789 917 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 SLAMF1Q13291 335 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 GTF2H2Q13888 395 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.09□□□□□ -0.312e-6■■□□□ 11.5
UPF3A-204ENST00000475218 GTF2H2CQ6P1K8 395 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 CHSY3Q70JA7 882 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 SPPL2CQ8IUH8 684 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 CYP4Z2PQ8N1L4 340 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 TMEM132CQ8N3T6 1108 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ZFP62Q8NB50 900 aaPredicted RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 MORN4Q8NDC4 146 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 SRFBP1Q8NEF9 429 aaKnown RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 OR52B6Q8NGF0 335 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 SLC2A12Q8TD20 617 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF721Q8TF20 911 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 IFT81Q8WYA0 676 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF592Q92610 1267 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 NSUN5Q96P11 429 aaKnown RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 CDK15Q96Q40 435 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 RASL10BQ96S79 203 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 FMO2Q99518 471 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 IPPKQ9H8X2 491 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 MYOTQ9UBF9 498 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ASB4Q9Y574 426 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ABCA12Q86UK0 2595 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 C17orf105B2RV13 164 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 WWP2O00308 870 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF24P17028 368 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 GCAP28676 217 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 BSGP35613 385 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 GPR85P60893 370 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 AP5B1Q2VPB7 878 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 CMPK2Q5EBM0 449 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 RPS27LQ71UM5 84 aaKnown RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ZCCHC7Q8N3Z6 543 aaKnown RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 PTGR2Q8N8N7 351 aaPredicted RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 OR14A16Q8NHC5 309 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 C16orf52Q8NHV5 167 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 UHMK1Q8TAS1 419 aaKnown RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 OR8D2Q9GZM6 311 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 ACTR8Q9H981 624 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 MTRF1LQ9UGC7 380 aaKnown RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 YARS2Q9Y2Z4 477 aaKnown RBP13.09□□□□□ -0.31
UPF3A-204ENST00000475218 HRH3Q9Y5N1 445 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 CLCA3PQ9Y6N3 262 aa13.09□□□□□ -0.31
UPF3A-204ENST00000475218 A0A0A6YYD5 115 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 A0A1W2PS29 197 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 PEX1O43933 1283 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 UGDHO60701 494 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 IGKV3-11P04433 115 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 CPN2P22792 545 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 SOX3P41225 446 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 SSR4P51571 173 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 TNFRSF17Q02223 184 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 RBPJQ06330 500 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 STX4Q12846 297 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 TRAF3Q13114 568 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 SERTAD2Q14140 314 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 RCN2Q14257 317 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 CPSF6Q16630 551 aaKnown RBP eCLIP13.08□□□□□ -0.322e-7■■■□□ 16.2
UPF3A-204ENST00000475218 HSDL2Q6YN16 418 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 GPR180Q86V85 440 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 MYLK4Q86YV6 388 aaPredicted RBP13.08□□□□□ -0.32
UPF3A-204ENST00000475218 TMEM156Q8N614 296 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 DOK4Q8TEW6 326 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 DAZLQ92904 295 aaKnown RBP13.08□□□□□ -0.32
UPF3A-204ENST00000475218 TMEM125Q96AQ2 219 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 RGMAQ96B86 450 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 PPWD1Q96BP3 646 aaKnown RBP13.08□□□□□ -0.32
UPF3A-204ENST00000475218 PHF12Q96QT6 1004 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 XPR1Q9UBH6 696 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 ADGRE2Q9UHX3 823 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 PCTPQ9UKL6 214 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms