RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PLSCR2Q9NRY7 297 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 ZDHHC18Q9NUE0 388 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 ACOT9Q9Y305 439 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 A0A0G2JMM0 328 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 A0A1B0GTH9 108 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 A0A1W2PPB8 328 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 A0A1W2PRS3 328 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 KIR3DP1A8MWS1 328 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 C17orf105B2RV13 164 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 E9PLN8 166 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 WWP2O00308 870 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 SAP18O00422 153 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 TGFB1P01137 390 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 PTGER4P35408 488 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 SOX3P41225 446 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 SSR2P43308 183 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 NR0B1P51843 470 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 HK2P52789 917 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 NAA30Q147X3 362 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 GPALPP1Q8IXQ4 340 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 RHEBL1Q8TAI7 183 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 SLC2A12Q8TD20 617 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 ASB15Q8WXK1 588 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 CMTM7Q96FZ5 175 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 VKORC1Q9BQB6 163 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 TRIM8Q9BZR9 551 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 OR51B5Q9H339 312 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 SNX15Q9NRS6 342 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 ERVK-11Q9UQG0 969 aa17.44■□□□□ 0.38
CCDC88B-206ENST00000473405 PHF3Q92576 2039 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 PINLYPA6NC86 204 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 A8MVJ9 347 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 PRRG2O14669 202 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 FGF17O60258 216 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 ZNF354AO60765 605 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 CLDN14O95500 239 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 ETHE1O95571 254 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 C2P06681 752 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 SNRPB2P08579 225 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 EPB42P16452 691 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 IGLV3-21P80748 117 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 SLC7A5Q01650 507 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 SERTAD2Q14140 314 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 SETDB1Q15047 1291 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 AP5B1Q2VPB7 878 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 MROH9Q5TGP6 573 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 CHSY3Q70JA7 882 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 CD163Q86VB7 1156 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 TEX9Q8N6V9 391 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 OR52N2Q8NGI0 321 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 OR8K3Q8NH51 312 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 HUS1BQ8NHY5 278 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 FAM57AQ8TBR7 257 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 DMRT3Q9NQL9 472 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 HPF1Q9NWY4 346 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 HRH3Q9Y5N1 445 aa17.43■□□□□ 0.38
CCDC88B-206ENST00000473405 HRNRQ86YZ3 2850 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 A0A087X1B8 175 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 LRRC14BA6NHZ5 514 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 SYCE1LA8MT33 242 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 PLPP1O14494 284 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 CDC40O60508 579 aaKnown RBP eCLIP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 ALDOAP04075 364 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 COX6B1P14854 86 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 PTGS2P35354 604 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 PIK3CBP42338 1070 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 RNF4P78317 190 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 DDX39BQ13838 428 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 FAM83EQ2M2I3 478 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 DEPDC1Q5TB30 811 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 IL20RBQ6UXL0 311 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 CCDC91Q7Z6B0 441 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 MARVELD2Q8N4S9 558 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 OR2M7Q8NG81 312 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 ZNF721Q8TF20 911 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 MTFMTQ96DP5 389 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 MRRFQ96E11 262 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 GPR78Q96P69 363 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 MTERF1Q99551 399 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 ZNF717Q9BY31 904 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 RUBCNLQ9H714 662 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 TSC22D4Q9Y3Q8 395 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 SPACA6W5XKT8 324 aa17.42■□□□□ 0.38
CCDC88B-206ENST00000473405 NCKAP5O14513 1909 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 CCDC189A1A4V9 331 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 KLK8O60259 260 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 TPOP07202 933 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 CPN2P22792 545 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 ALDH18A1P54886 795 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 SLAMF1Q13291 335 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 PFKFB4Q16877 469 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 OR4C11Q6IEV9 310 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 C8orf74Q6P047 294 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 DGAT2L6Q6ZPD8 337 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 GDF7Q7Z4P5 450 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 OR4N5Q8IXE1 308 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 SCYL1Q96KG9 808 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 LRRC1Q9BTT6 524 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 ADGRE2Q9UHX3 823 aa17.41■□□□□ 0.38
CCDC88B-206ENST00000473405 PPT2Q9UMR5 302 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms