RNA–Protein interactions for RNA: ENST00000462236.1

COPS3-204, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-204ENST00000462236 ROR2Q01974 943 aaKnown RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 MAMLD1Q13495 774 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 OLIG2Q13516 323 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 DCTN2Q13561 401 aaKnown RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 TBCEQ15813 527 aaPredicted RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 HSPB2Q16082 182 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 UGP2Q16851 508 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 DPCR1Q3MIW9 517 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 DNTTIP2Q5QJE6 756 aaKnown RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 TRNP1Q6NT89 227 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 ZNF517Q6ZMY9 492 aaPredicted RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 MON1BQ7L1V2 547 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 PCGF5Q86SE9 256 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 SFRP1Q8N474 314 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 GJC3Q8NFK1 279 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 SMARCE1Q969G3 411 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 SNRNP40Q96DI7 357 aaKnown RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 ZC3HAV1LQ96H79 300 aaKnown RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 FCRL4Q96PJ5 515 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 WRAP53Q9BUR4 548 aaKnown RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 SLC25A23Q9BV35 468 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 HEMGNQ9BXL5 484 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 GSDMCQ9BYG8 508 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 NPFFR1Q9GZQ6 430 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 LHPPQ9H008 270 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 TKTL2Q9H0I9 626 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 PLAC1Q9HBJ0 212 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 ASF1BQ9NVP2 202 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 TMEM51Q9NW97 253 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 RCOR3Q9P2K3 495 aaPredicted RBP4.6□□□□□ -1.67
COPS3-204ENST00000462236 LHX3Q9UBR4 397 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 SLC17A4Q9Y2C5 497 aa4.6□□□□□ -1.67
COPS3-204ENST00000462236 HRNRQ86YZ3 2850 aaPredicted RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 SYNJ2BP-COX16A0A087WUM0 186 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 A6NCN8 305 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 ANKUB1A6NFN9 424 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 BECN2A8MW95 431 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 EIF3CLB5ME19 914 aaKnown RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 C21orf140B9A014 251 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 NPIPB11E5RHQ5 1161 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 CACNB4O00305 520 aaPredicted RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 E2F3O00716 465 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 WNT9BO14905 357 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 POLR1CO15160 346 aaPredicted RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 CETN3O15182 167 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 P4HA2O15460 535 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 SEC14L5O43304 696 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 KDELR3O43731 214 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 DPM1O60762 260 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PAGE4O60829 102 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 GRAP2O75791 330 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 RECQL5O94762 991 aaPredicted RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 PIGNO95427 931 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 TOMM40O96008 361 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PCCBP05166 539 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 IVLP07476 585 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 MMP2P08253 660 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 SPARCP09486 303 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 FREM3P0C091 2139 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 TFPIP10646 304 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 EPB41P11171 864 aaKnown RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 FGF5P12034 268 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 ARF3P61204 181 aaPredicted RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 ARF1P84077 181 aaKnown RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 LRMPQ12912 555 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 NME3Q13232 169 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 GPR18Q14330 331 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 CHRNA6Q15825 494 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PTPN20Q4JDL3 420 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 ESCO2Q56NI9 601 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PLEKHA7Q6IQ23 1121 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PNCKQ6P2M8 343 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 C11orf57Q6ZUT1 292 aaPredicted RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 FAM183BPQ6ZVS7 135 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 LINGO2Q7L985 606 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 TECPR1Q7Z6L1 1165 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PXKQ7Z7A4 578 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 SLC47A2Q86VL8 602 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 SLC37A2Q8TED4 501 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 INTS12Q96CB8 462 aaKnown RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 ECHDC3Q96DC8 303 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 URB1-AS1Q96HZ7 61 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 NSMCE3Q96MG7 304 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 GDAP1L1Q96MZ0 367 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 BBS4Q96RK4 519 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PIP5K1AQ99755 562 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 NUDT9Q9BW91 350 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 ZYG11BQ9C0D3 744 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 AKIRIN1Q9H9L7 192 aaPredicted RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 ACP6Q9NPH0 428 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 LHX9Q9NQ69 397 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 HIF1ANQ9NWT6 349 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 COX16Q9P0S2 106 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 LIMA1Q9UHB6 759 aaKnown RBP4.59□□□□□ -1.67
COPS3-204ENST00000462236 NTNG1Q9Y2I2 539 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 LYVE1Q9Y5Y7 322 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 PSAT1Q9Y617 370 aa4.59□□□□□ -1.67
COPS3-204ENST00000462236 EML6Q6ZMW3 1958 aa4.58□□□□□ -1.68
COPS3-204ENST00000462236 ZSCAN5CA6NGD5 496 aaPredicted RBP4.58□□□□□ -1.68
COPS3-204ENST00000462236 LILRA5A6NI73 299 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms