RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TMEM156Q8N614 296 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 OR52B6Q8NGF0 335 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 MTBPQ96DY7 904 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 FRMD6Q96NE9 622 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 CDK15Q96Q40 435 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 NME2P1O60361 137 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 NME2P22392 152 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 GCAP28676 217 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 TLX1P31314 330 aaPredicted RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 TNFRSF17Q02223 184 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 RBPJQ06330 500 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 C1QL3Q5VWW1 255 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 TIFABQ6ZNK6 161 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 GPR180Q86V85 440 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 ZNF227Q86WZ6 799 aa19.76■□□□□ 0.75
HMGB3-205ENST00000455596 PTPMT1Q8WUK0 201 aaPredicted RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 ANKRD9Q96BM1 317 aaPredicted RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 NSUN5Q96P11 429 aaKnown RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 RPF2Q9H7B2 306 aaKnown RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 YARS2Q9Y2Z4 477 aaKnown RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 DIDO1Q9BTC0 2240 aaKnown RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 USP9YO00507 2555 aaPredicted RBP19.76■□□□□ 0.75
HMGB3-205ENST00000455596 C17orf105B2RV13 164 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 FGF17O60258 216 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 PRKNO60260 465 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 FAM153BP0C7A2 387 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 COX7A2P14406 83 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 BUD31P41223 144 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 SSR4P51571 173 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 NEK2P51955 445 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 HNRNPH2P55795 449 aaKnown RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 ID2Q02363 134 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 BIKQ13323 160 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 FAM153CQ494X1 144 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 TTC19Q6DKK2 380 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 HSDL2Q6YN16 418 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 MAMDC2Q7Z304 686 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 FJX1Q86VR8 437 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 ZNF717Q9BY31 904 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 OR8D2Q9GZM6 311 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 ZBTB26Q9HCK0 441 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 SEMA4BQ9NPR2 832 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 LYARQ9NX58 379 aaKnown RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 PPT2Q9UMR5 302 aa19.75■□□□□ 0.75
HMGB3-205ENST00000455596 KLF13Q9Y2Y9 288 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-205ENST00000455596 A0A0A6YYD5 115 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 IQANK1A0A1B0GTG1 560 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 ETHE1O95571 254 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 CLDN1O95832 211 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 RPS17P08708 135 aaKnown RBP19.74■□□□□ 0.75
HMGB3-205ENST00000455596 BSGP35613 385 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 IGLV3-21P80748 117 aaPredicted RBP19.74■□□□□ 0.75
HMGB3-205ENST00000455596 TRAF3Q13114 568 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.74■□□□□ 0.756e-7■■□□□ 14.3
HMGB3-205ENST00000455596 KRTCAP3Q53RY4 240 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 C18orf63Q68DL7 685 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 HIST2H2BCQ6DN03 193 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 CYP20A1Q6UW02 462 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 MILR1Q7Z6M3 343 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 NUDT13Q86X67 352 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 OR4N5Q8IXE1 308 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 CYP4Z2PQ8N1L4 340 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 SLC2A12Q8TD20 617 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 TANKQ92844 425 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 RELTQ969Z4 430 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 MTFMTQ96DP5 389 aaKnown RBP19.74■□□□□ 0.75
HMGB3-205ENST00000455596 GPR137Q96N19 417 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 DGAT2Q96PD7 388 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 SERPINI1Q99574 410 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 DDX31Q9H8H2 851 aaKnown RBP19.74■□□□□ 0.75
HMGB3-205ENST00000455596 ATG4BQ9Y4P1 393 aa19.74■□□□□ 0.75
HMGB3-205ENST00000455596 SPTBN1Q01082 2364 aaKnown RBP19.74■□□□□ 0.75
HMGB3-205ENST00000455596 GTF3C1Q12789 2109 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 MYO7BQ6PIF6 2116 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 TRGV8A0A0C4DH27 118 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 A8MT66 165 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 NPIPA5E9PKD4 350 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 PROM1O43490 865 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 EEDO75530 441 aaKnown RBP19.73■□□□□ 0.75
HMGB3-205ENST00000455596 SEMA3DO95025 777 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 SBK3P0C264 359 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 STT3AP46977 705 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 FOLH1Q04609 750 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 SLC29A2Q14542 456 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 GGTA1PQ4G0N0 100 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 TEX35Q5T0J7 233 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 C10orf62Q5T681 223 aaPredicted RBP19.73■□□□□ 0.75
HMGB3-205ENST00000455596 FRG2Q64ET8 278 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 MRM1Q6IN84 353 aaKnown RBP19.73■□□□□ 0.75
HMGB3-205ENST00000455596 LCA5Q86VQ0 697 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 GPALPP1Q8IXQ4 340 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 TMEM151AQ8N4L1 468 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 CPSF7Q8N684 471 aaKnown RBP19.73■□□□□ 0.75
HMGB3-205ENST00000455596 OR4F6Q8NGB9 312 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 OR8K3Q8NH51 312 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 FRG2BQ96QU4 278 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 TXLNGYQ9BZA5 131 aa19.73■□□□□ 0.75
HMGB3-205ENST00000455596 TSPAN10Q9H1Z9 355 aaPredicted RBP19.73■□□□□ 0.75
HMGB3-205ENST00000455596 LIN28AQ9H9Z2 209 aaKnown RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms