RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TRBV4-1A0A0J9YWV2 114 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 FEZF1A0PJY2 475 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 H7BY64 318 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 CPNE3O75131 537 aaKnown RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 COQ9O75208 318 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 C8orf89P0DMQ9 161 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 OR12D1P0DN82 309 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 IMPA1P29218 277 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 GRK5P34947 590 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 MAGEA2P43356 314 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 WNT3P56703 355 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 FADDQ13158 208 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 NFE2L1Q14494 772 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 C9orf64Q5T6V5 341 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 METTL2BQ6P1Q9 378 aaKnown RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 ZNF730Q6ZMV8 503 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 LHFPL3Q86UP9 236 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 PRAP1Q96NZ9 151 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 TBX5Q99593 518 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 TMED9Q9BVK6 235 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 TRPV5Q9NQA5 729 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 IMP3Q9NV31 184 aaKnown RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 HCFC1R1Q9NWW0 138 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 TBC1D14Q9P2M4 693 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 NUFIP1Q9UHK0 495 aaKnown RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 CARD8Q9Y2G2 431 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 M0R3H8 397 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 SLC30A4O14863 429 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 EIF2S1P05198 315 aaKnown RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 SLC6A12P48065 614 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 SMIM11AP58511 58 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 KCNC4Q03721 635 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 DUSP7Q16829 419 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 GGTA1PQ4G0N0 100 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 DDI2Q5TDH0 399 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 SYCE2Q6PIF2 218 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 RAB42Q8N4Z0 105 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 KREMEN2Q8NCW0 462 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 BTN2A2Q8WVV5 523 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 GATAD2BQ8WXI9 593 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 RNFT2Q96EX2 444 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 SLC6A16Q9GZN6 736 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 RNF208Q9H0X6 261 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 ZNF624Q9P2J8 865 aaPredicted RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 SRRDQ9UH36 339 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 FBXW2Q9UKT8 454 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 ZNF236Q9UL36 1845 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 PITPNM1O00562 1244 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 RHCEP18577 417 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 WASP42768 502 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 CAV3P56539 151 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 SRP54P61011 504 aaKnown RBP11.33□□□□□ -0.6
MSH6-204ENST00000445503 PLPP4Q5VZY2 271 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 GAREM2Q75VX8 874 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 LAX1Q8IWV1 398 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 OR52E4Q8NGH9 312 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 OR9A1PQ8NGU1 263 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 APH1BQ8WW43 257 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 LRR1Q96L50 414 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 NEDD4LQ96PU5 975 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 AIF1LQ9BQI0 150 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 ZNF226Q9NYT6 803 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 PCDHGB1Q9Y5G3 927 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 TRBV5-4A0A0C4DH59 114 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 ANHXE9PGG2 379 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 PI15O43692 258 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 GPR37L1O60883 481 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 KCNK2O95069 426 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 CCT3P49368 545 aaKnown RBP11.33□□□□□ -0.6
MSH6-204ENST00000445503 KLHL12Q53G59 568 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 CDKL4Q5MAI5 379 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 BHLHE41Q9C0J9 482 aaPredicted RBP11.33□□□□□ -0.6
MSH6-204ENST00000445503 GABARAPL1Q9H0R8 117 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 IL20RAQ9UHF4 553 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 CCL26Q9Y258 94 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 CMAHPQ9Y471 501 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 NTSP30990 170 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 TGFBR2P37173 567 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 GZMMP51124 257 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 RBBP4Q09028 425 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 FAHD1Q6P587 224 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 KRT74Q7RTS7 529 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 C6orf120Q7Z4R8 191 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 RBM45Q8IUH3 476 aaKnown RBP11.33□□□□□ -0.6
MSH6-204ENST00000445503 GHDCQ8N2G8 530 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 C7orf34Q96L11 122 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 SLC38A2Q96QD8 506 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 MND1Q9BWT6 205 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 SLC22A4Q9H015 551 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 RACGAP1Q9H0H5 632 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 IL36AQ9UHA7 158 aa11.33□□□□□ -0.6
MSH6-204ENST00000445503 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.32□□□□□ -0.6
MSH6-204ENST00000445503 A0A1W2PQ09 198 aa11.32□□□□□ -0.6
MSH6-204ENST00000445503 A0A1W2PQL4 384 aaPredicted RBP11.32□□□□□ -0.6
MSH6-204ENST00000445503 RNASET2O00584 256 aaKnown RBP11.32□□□□□ -0.6
MSH6-204ENST00000445503 IFI30P13284 250 aa11.32□□□□□ -0.6
MSH6-204ENST00000445503 PCSK2P16519 638 aa11.32□□□□□ -0.6
MSH6-204ENST00000445503 IL1RNP18510 177 aa11.32□□□□□ -0.6
MSH6-204ENST00000445503 PAICSP22234 425 aaKnown RBP11.32□□□□□ -0.6
MSH6-204ENST00000445503 AVPR1BP47901 424 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms