RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 COL8A1P27658 744 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 BUD31P41223 144 aaPredicted RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 PCDH1Q08174 1060 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 ZRSR2Q15696 482 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 KRTCAP3Q53RY4 240 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 DEPDC1Q5TB30 811 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 LGSNQ5TDP6 509 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 TTC19Q6DKK2 380 aaPredicted RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 METTL2BQ6P1Q9 378 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 MTFR2Q6P444 385 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 CYP20A1Q6UW02 462 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 IFT20Q8IY31 132 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 PLD6Q8N2A8 252 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 CPSF7Q8N684 471 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 MORN4Q8NDC4 146 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 C7orf57Q8NEG2 295 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 GPR78Q96P69 363 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 DGAT2Q96PD7 388 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 NOL11Q9H8H0 719 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 ZNF358Q9NW07 568 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 HPF1Q9NWY4 346 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 KCMF1Q9P0J7 381 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 VTI1BQ9UEU0 232 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 PPIEQ9UNP9 301 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 YARS2Q9Y2Z4 477 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 NBPF19A0A087WUL8 3843 aa18.49■□□□□ 0.55
SHROOM1-204ENST00000440118 NOTCH2Q04721 2471 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 ESPNB1AK53 854 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 H0YIV9 168 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 ESRRAP11474 423 aaPredicted RBP18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 ABOP16442 354 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 PTX3P26022 381 aaPredicted RBP18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 ECHS1P30084 290 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 MEOX1P50221 254 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 PLIN5Q00G26 463 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 TNFRSF17Q02223 184 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 GPR180Q86V85 440 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 RELTQ969Z4 430 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 RPF2Q9H7B2 306 aaKnown RBP18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 WDR41Q9HAD4 459 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 TIMMDC1Q9NPL8 285 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 ZNF180Q9UJW8 692 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 ZNF223Q9UK11 482 aaPredicted RBP18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 NFU1Q9UMS0 254 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 RNF11Q9Y3C5 154 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 CLDN16Q9Y5I7 305 aa18.48■□□□□ 0.55
SHROOM1-204ENST00000440118 GTF3C1Q12789 2109 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 WWP2O00308 870 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 PLPP1O14494 284 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 OR2J2O76002 312 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 COL6A2P12110 1019 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 CA7P43166 264 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 MAGEA12P43365 314 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 NUDT13Q86X67 352 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 OR4N5Q8IXE1 308 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 ARMC10Q8N2F6 343 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 GHDCQ8N2G8 530 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 POGLUT1Q8NBL1 392 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 SLC2A12Q8TD20 617 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 ISL2Q96A47 359 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 RBM18Q96H35 190 aaKnown RBP18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 CDK15Q96Q40 435 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 TRIM45Q9H8W5 580 aaPredicted RBP18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 LIN28AQ9H9Z2 209 aaKnown RBP18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 LYARQ9NX58 379 aaKnown RBP18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 TSC22D4Q9Y3Q8 395 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 PCNX1Q96RV3 2341 aa18.47■□□□□ 0.55
SHROOM1-204ENST00000440118 STX16-NPEPL1H3BU86 382 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 STX16O14662 325 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 FGF17O60258 216 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 PRKNO60260 465 aaPredicted RBP18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 OR10H2O60403 315 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 SNRPAP09012 282 aaKnown RBP18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 NR2F6P10588 404 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 RFC3P40938 356 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 GPR143P51810 404 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 GPR85P60893 370 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 IFT88Q13099 833 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 TEX35Q5T0J7 233 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 ZNF787Q6DD87 383 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 C16orf47Q6ZP98 133 aaPredicted RBP18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 GPALPP1Q8IXQ4 340 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 ZCCHC7Q8N3Z6 543 aaKnown RBP18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 OR5L2Q8NGL0 311 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 PTPMT1Q8WUK0 201 aaPredicted RBP18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 DCAKDQ8WVC6 231 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 ART5Q96L15 291 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 MRPL57Q9BQC6 102 aaKnown RBP18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 MRPL46Q9H2W6 279 aaKnown RBP18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 MYOTQ9UBF9 498 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 TINAGQ9UJW2 476 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 TEX15Q9BXT5 2789 aa18.46■□□□□ 0.55
SHROOM1-204ENST00000440118 CACNA1DQ01668 2161 aa18.45■□□□□ 0.54
SHROOM1-204ENST00000440118 ARHGAP10A1A4S6 786 aa18.45■□□□□ 0.54
SHROOM1-204ENST00000440118 PRSS44E7EML9 344 aa18.45■□□□□ 0.54
SHROOM1-204ENST00000440118 ASNA1O43681 348 aa18.45■□□□□ 0.54
SHROOM1-204ENST00000440118 PEX1O43933 1283 aa18.45■□□□□ 0.54
SHROOM1-204ENST00000440118 CDC40O60508 579 aaKnown RBP eCLIP18.45■□□□□ 0.54
SHROOM1-204ENST00000440118 RHOXF2BP0C7M4 288 aa18.45■□□□□ 0.54
SHROOM1-204ENST00000440118 DCTP40126 519 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms