RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PPP6CO00743 305 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 FCHO1O14526 889 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 MAN1A2O60476 641 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 EEDO75530 441 aaKnown RBP14.18□□□□□ -0.14
LIMS3-201ENST00000437679 MLYCDO95822 493 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 FAM58BPP0C7Q3 252 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 MYL2P10916 166 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 CD96P40200 585 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 HNRNPH2P55795 449 aaKnown RBP14.18□□□□□ -0.14
LIMS3-201ENST00000437679 MLF1P58340 268 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 ID2Q02363 134 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 BIKQ13323 160 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 MRPL49Q13405 166 aaKnown RBP14.18□□□□□ -0.14
LIMS3-201ENST00000437679 ZNF766Q5HY98 468 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 FAM26EQ8N5C1 309 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 APCDD1LQ8NCL9 501 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 OR14A16Q8NHC5 309 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 FAR1Q8WVX9 515 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 SELENOMQ8WWX9 145 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 TANKQ92844 425 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 ANKRD9Q96BM1 317 aaPredicted RBP14.18□□□□□ -0.14
LIMS3-201ENST00000437679 C5orf34Q96MH7 638 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 ZNF382Q96SR6 550 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 WDR41Q9HAD4 459 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 ANKRD10Q9NXR5 420 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 GRID1Q9ULK0 1009 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 PPIEQ9UNP9 301 aaKnown RBP14.18□□□□□ -0.14
LIMS3-201ENST00000437679 ATG4BQ9Y4P1 393 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 DOPEY2Q9Y3R5 2298 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 A0A1B0GTL3 188 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 TLDC2A0PJX2 215 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 ARHGAP10A1A4S6 786 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 ANKUB1A6NFN9 424 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 FOXO6A8MYZ6 492 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 ESPNB1AK53 854 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 C17orf105B2RV13 164 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 COPEO14579 308 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 PROM1O43490 865 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 TMPRSS11DO60235 418 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 OR4F21O95013 312 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 RASAL1O95294 804 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 CBX6O95503 412 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 COX7A2P14406 83 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 CD46P15529 392 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 TPP2P29144 1249 aaPredicted RBP14.17□□□□□ -0.14
LIMS3-201ENST00000437679 CRHR1P34998 444 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 IFFO1Q0D2I5 559 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 UBAP2LQ14157 1087 aaKnown RBP14.17□□□□□ -0.14
LIMS3-201ENST00000437679 OR1C1Q15619 314 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 CCDC153Q494R4 210 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 FHL5Q5TD97 284 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 C18orf63Q68DL7 685 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 MRM1Q6IN84 353 aaKnown RBP14.17□□□□□ -0.14
LIMS3-201ENST00000437679 WDR93Q6P2C0 686 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 EMBQ6PCB8 327 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 ZYG11AQ6WRX3 759 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 SH2D5Q6ZV89 423 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 GPRIN3Q6ZVF9 776 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 PAGE2Q7Z2X7 111 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 OR4N5Q8IXE1 308 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 MORN4Q8NDC4 146 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 L3HYPDHQ96EM0 354 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 DGAT2Q96PD7 388 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 BRF2Q9HAW0 419 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 OLAHQ9NV23 265 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 NMRK1Q9NWW6 199 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.17□□□□□ -0.14
LIMS3-201ENST00000437679 ADAM29Q9UKF5 820 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 EMCNQ9ULC0 261 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 SLC12A4Q9UP95 1085 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 ASB4Q9Y574 426 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 V9GYY5 206 aaPredicted RBP14.17□□□□□ -0.14
LIMS3-201ENST00000437679 ZGRF1Q86YA3 2104 aa14.17□□□□□ -0.14
LIMS3-201ENST00000437679 HIVEP3Q5T1R4 2406 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 POLEQ07864 2286 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 DYRK3O43781 588 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 FGF17O60258 216 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 ZFAND5O76080 213 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 PDYNP01213 254 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 KRT6AP02538 564 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 GBAP04062 536 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 PROCP04070 461 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 KRT6BP04259 564 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 KLK1P06870 262 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 NUDT17P0C025 328 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 NR2F6P10588 404 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 EDN3P14138 238 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 KRT4P19013 534 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 HMOX2P30519 316 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 STT3AP46977 705 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 KRT6CP48668 564 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 CYB561P49447 251 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 ST13P50502 369 aaKnown RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 GPR143P51810 404 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 IGLV3-21P80748 117 aaPredicted RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 FOLH1Q04609 750 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 LCP2Q13094 533 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 EIF2S3LQ2VIR3 472 aaKnown RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 SPINK14Q6IE38 97 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 METTL4Q8N3J2 472 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms