RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SPIN4Q56A73 249 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 OGFOD2Q6N063 350 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 ASPGQ86U10 573 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 TICAM1Q8IUC6 712 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 GPR135Q8IZ08 494 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 RNF175Q8N4F7 328 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 DNAJC22Q8N4W6 341 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 FER1L6-AS2Q96M78 137 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 C5orf34Q96MH7 638 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 C1orf50Q9BV19 199 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 MS4A8Q9BY19 250 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 IRAK4Q9NWZ3 460 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 C1orf109Q9NX04 203 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 NOP53Q9NZM5 478 aaKnown RBP11.47□□□□□ -0.57
PTPRF-208ENST00000437607 HEY2Q9UBP5 337 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 VPS29Q9UBQ0 182 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 GIMAP2Q9UG22 337 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 TMED5Q9Y3A6 229 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 POLR3HQ9Y535 204 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-208ENST00000437607 AP1M2Q9Y6Q5 423 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 URADA6NGE7 173 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 ZSCAN9O15535 394 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 CTSVO60911 334 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 ALOX12BO75342 701 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 SH3BGRLO75368 114 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 SEC22BO75396 215 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 MYO1DO94832 1006 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 TGFB1P01137 390 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 SERPINA6P08185 405 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 PRR35P0CG20 571 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 PRPH2P23942 346 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 DCDP81605 110 aaKnown RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 RELAQ04206 551 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 TGM3Q08188 693 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 SQLEQ14534 574 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 SMU1Q2TAY7 513 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 AP5B1Q2VPB7 878 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 TOR1AIP1Q5JTV8 583 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 C1QL3Q5VWW1 255 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 KHDRBS2Q5VWX1 349 aaKnown RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 METTL21CQ5VZV1 264 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 Q6ZSR9 355 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 CHSY3Q70JA7 882 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 LARP4Q71RC2 724 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 VN1R5Q7Z5H4 357 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 SPATA19Q7Z5L4 167 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 CSNK1A1LQ8N752 337 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 CLEC1AQ8NC01 280 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 CAMKVQ8NCB2 501 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 PROKR1Q8TCW9 393 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 ERP27Q96DN0 273 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 MARK4Q96L34 752 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 LRRC37BQ96QE4 947 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 NMUR2Q9GZQ4 415 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 OR51B5Q9H339 312 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 COPS7BQ9H9Q2 264 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 AHSPQ9NZD4 102 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 IFT80Q9P2H3 777 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 GPN3Q9UHW5 284 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 EIF3LQ9Y262 564 aaKnown RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 COPG1Q9Y678 874 aaKnown RBP11.46□□□□□ -0.57
PTPRF-208ENST00000437607 CAPN7Q9Y6W3 813 aa11.46□□□□□ -0.57
PTPRF-208ENST00000437607 ADGRG4Q8IZF6 3080 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 ENO4A6NNW6 628 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 NPIPB8E9PQR5 432 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 PEX12O00623 359 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 FCHO1O14526 889 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 LCMT2O60294 686 aaKnown RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 STATHP02808 62 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 ALPPP05187 535 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 IDO1P14902 403 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 ACPPP15309 386 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 PTX3P26022 381 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 SSR2P43308 183 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 IRX1P78414 480 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 PWP1Q13610 501 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 CUL3Q13618 768 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 GSTA3Q16772 222 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 NKAIN1Q4KMZ8 207 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 TMEM35AQ53FP2 167 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 C6orf136Q5SQH8 315 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 TMEM198Q66K66 360 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 TRIM40Q6P9F5 258 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 PAGE2Q7Z2X7 111 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 VN1R4Q7Z5H5 301 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 PARP9Q8IXQ6 854 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 C1orf52Q8N6N3 182 aaKnown RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 ST6GALNAC3Q8NDV1 305 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 SRFBP1Q8NEF9 429 aaKnown RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 NT5CQ8TCD5 201 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 SLC13A3Q8WWT9 602 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 GAL3ST3Q96A11 431 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 METTL2AQ96IZ6 378 aaKnown RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 C17orf62Q9BQA9 187 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 MRPL1Q9BYD6 325 aaKnown RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 REXO4Q9GZR2 422 aaKnown RBP11.45□□□□□ -0.58
PTPRF-208ENST00000437607 ATP13A2Q9NQ11 1180 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 AIG1Q9NVV5 245 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 NDOR1Q9UHB4 597 aa11.45□□□□□ -0.58
PTPRF-208ENST00000437607 PLCL2Q9UPR0 1127 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms