RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 IGSF5Q9NSI5 407 aa7.48□□□□□ -1.21
VIM-202ENST00000421459 CTNNAL1Q9UBT7 734 aa7.48□□□□□ -1.21
VIM-202ENST00000421459 VTI1BQ9UEU0 232 aa7.48□□□□□ -1.21
VIM-202ENST00000421459 ST6GALNAC2Q9UJ37 374 aa7.48□□□□□ -1.21
VIM-202ENST00000421459 MTO1Q9Y2Z2 717 aaKnown RBP7.48□□□□□ -1.21
VIM-202ENST00000421459 ATG4BQ9Y4P1 393 aa7.48□□□□□ -1.21
VIM-202ENST00000421459 TEX264Q9Y6I9 313 aa7.48□□□□□ -1.21
VIM-202ENST00000421459 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.48□□□□□ -1.21
VIM-202ENST00000421459 MED13LQ71F56 2210 aa7.48□□□□□ -1.21
VIM-202ENST00000421459 MTORP42345 2549 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 CACNA1CQ13936 2221 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 TRGV5A0A0B4J1U4 118 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 OR14I1A6ND48 311 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 FIGNL2A6NMB9 653 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 GOLGA6L6A8MZA4 724 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 AQP7O14520 342 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 FGF17O60258 216 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 TGFB1P01137 390 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 P04436 131 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 ATP5A1P25705 553 aaKnown RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 UQCRC1P31930 480 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 KIR2DL3P43628 341 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 KCNC1P48547 511 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 FNTAP49354 379 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 AGFG1P52594 562 aaKnown RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 MRPS25P82663 173 aaKnown RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 CDKL1Q00532 357 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 TGFBIQ15582 683 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 OR4D1Q15615 310 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 ZNF791Q3KP31 576 aaPredicted RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 PIGGQ5H8A4 983 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 WLSQ5T9L3 541 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 NDUFAF5Q5TEU4 345 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 STEAP4Q687X5 459 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 TRIM40Q6P9F5 258 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 LYPD8Q6UX82 237 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 RGS9BPQ6ZS82 235 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 GK5Q6ZS86 529 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 FRA10AC1Q70Z53 315 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 CDC20BQ86Y33 519 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 C9orf40Q8IXQ3 194 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 GPALPP1Q8IXQ4 340 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 KRT78Q8N1N4 520 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 FAM109AQ8N4B1 249 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 NKAPQ8N5F7 415 aaKnown RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 RELL2Q8NC24 303 aaPredicted RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 NAXEQ8NCW5 288 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 TNIP2Q8NFZ5 429 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 ACTRT1Q8TDG2 376 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 GRK7Q8WTQ7 553 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 DAZLQ92904 295 aaKnown RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 JSRP1Q96MG2 331 aaPredicted RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 CLEC4MQ9H2X3 399 aaPredicted RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 COPS7BQ9H9Q2 264 aaPredicted RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 SH2D2AQ9NP31 389 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 RASSF1Q9NS23 344 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 SACM1LQ9NTJ5 587 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 MRPS33Q9Y291 106 aaKnown RBP7.47□□□□□ -1.21
VIM-202ENST00000421459 JRKLQ9Y4A0 524 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 ITPR3Q14573 2671 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 HCFC1P51610 2035 aa7.47□□□□□ -1.21
VIM-202ENST00000421459 GTF3C1Q12789 2109 aa7.46□□□□□ -1.21
VIM-202ENST00000421459 LRRC3CA6NJW4 275 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 CXorf49A8MYA2 514 aaPredicted RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 TP73O15350 636 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 PHGDHO43175 533 aaKnown RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 SUSD5O60279 629 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 WISP3O95389 354 aaPredicted RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 BMP5P22003 454 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 MSH2P43246 934 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 HNMTP50135 292 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 ADAM8P78325 824 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 FOLH1Q04609 750 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 MGAT5Q09328 741 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 HYAL4Q2M3T9 481 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 C18orf63Q68DL7 685 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 BICRALQ6AI39 1079 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 KLHL7Q8IXQ5 586 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 ULK2Q8IYT8 1036 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 ACOT4Q8N9L9 421 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 GOLM1Q8NBJ4 401 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 FBXO36Q8NEA4 188 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 TTLQ8NG68 377 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 OR10G3Q8NGC4 313 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 OR14A16Q8NHC5 309 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 GABPB2Q8TAK5 448 aaPredicted RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 LINC01560Q8TB33 94 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 EXT2Q93063 718 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 SENP5Q96HI0 755 aaPredicted RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 NAT9Q9BTE0 207 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 MCMBPQ9BTE3 642 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 TRIM31Q9BZY9 425 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 EPB41L4BQ9H329 900 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 OR51B5Q9H339 312 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 NT5DC2Q9H857 520 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 PRM3Q9NNZ6 103 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 DMRT3Q9NQL9 472 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 DLL4Q9NR61 685 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 DNAJC11Q9NVH1 559 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 WWOXQ9NZC7 414 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms