RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ZNF45Q02386 682 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MED22Q15528 200 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 LRRC26Q2I0M4 334 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 C12orf73Q69YU5 71 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 DPPA4Q7L190 304 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 ZNF367Q7RTV3 350 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 C12orf40Q86WS4 652 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 LAX1Q8IWV1 398 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 STX19Q8N4C7 294 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 BMPERQ8N8U9 685 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 TP53I13Q8NBR0 393 aaPredicted RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 PXYLP1Q8TE99 480 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 TP63Q9H3D4 680 aaPredicted RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 TAS2R9Q9NYW1 312 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 EHD3Q9NZN3 535 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 DNAJC27Q9NZQ0 273 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 RAB23Q9ULC3 237 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 YARS2Q9Y2Z4 477 aaKnown RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 SNX8Q9Y5X2 465 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 AP1M2Q9Y6Q5 423 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 PPM1DO15297 605 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 GADD45GO95257 159 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 CLEC2LP0C7M8 214 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 C1GALT1C1LP0DN25 315 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 TYRP14679 529 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 ZNF30P17039 623 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 ENDOUP21128 410 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 PTGER1P34995 402 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 CD79BP40259 229 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 DMPKQ09013 629 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 GPR50Q13585 617 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 TOR1AIP1Q5JTV8 583 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 NRARPQ7Z6K4 114 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 HMGN2P46Q86SG4 172 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 FAM129CQ86XR2 697 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 IQCF1Q8N6M8 205 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 PDXPQ96GD0 296 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 MENTQ9BUN1 341 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 MAN2C1Q9NTJ4 1040 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 SPATA7Q9P0W8 599 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 DUSP12Q9UNI6 340 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 CCL16O15467 120 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 PPIBP23284 216 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 ZDHHC20Q5W0Z9 365 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 SAXO2Q658L1 398 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 TMIGD1Q6UXZ0 262 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 METTL3Q86U44 580 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 MEX3DQ86XN8 651 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 GEMIN6Q8WXD5 167 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 RAB8BQ92930 207 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 EFHD2Q96C19 240 aaPredicted RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 CXorf40BQ96DE9 158 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 COQ10AQ96MF6 247 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 ZDHHC5Q9C0B5 715 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 ZBP1Q9H171 429 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 SYNPO2LQ9H987 977 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 ABT1Q9ULW3 272 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 CORO2BQ9UQ03 480 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 PLD2O14939 933 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 KPNA5O15131 536 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 CYP7B1O75881 506 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 CCNB2O95067 398 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 SCG5P05408 212 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 HTR3AP46098 478 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 RBBP4Q09028 425 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 FBXO43Q4G163 708 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 Q5BKY6 102 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 TMEM201Q5SNT2 666 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 LY6G5CQ5SRR4 150 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 AKAP14Q86UN6 197 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 UBQLNLQ8IYU4 475 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 RAET1EQ8TD07 263 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 ZNF486Q96H40 463 aaPredicted RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 ST6GAL2Q96JF0 529 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 MAGEB10Q96LZ2 347 aaPredicted RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 ZNF558Q96NG5 402 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 TRNT1Q96Q11 434 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 DCLRE1CQ96SD1 692 aaKnown RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 ZSCAN5AQ9BUG6 496 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 CNPPD1Q9BV87 410 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 HMX1Q9NP08 348 aaPredicted RBP9.38□□□□□ -0.91
SS18-203ENST00000415083 PRKAB1Q9Y478 270 aa9.38□□□□□ -0.91
SS18-203ENST00000415083 TRAV19A0A0A6YYK7 116 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 LINC00854A0A1B0GVQ3 168 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 A0A1W2PRB8 838 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 ARRDC5A6NEK1 342 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 A8MV72 311 aaPredicted RBP9.37□□□□□ -0.91
SS18-203ENST00000415083 HMGN4O00479 90 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 CAPN5O15484 640 aaPredicted RBP9.37□□□□□ -0.91
SS18-203ENST00000415083 DYRK3O43781 588 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 TPST2O60704 377 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 ATG13O75143 517 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 RHCEP18577 417 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 ELOAQ14241 798 aaKnown RBP9.37□□□□□ -0.91
SS18-203ENST00000415083 STARD3Q14849 445 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 PGBD2Q6P3X8 592 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 TNFAIP8L2Q6P589 184 aaPredicted RBP9.37□□□□□ -0.91
SS18-203ENST00000415083 NXPE4Q6UWF7 544 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 UBE3DQ7Z6J8 389 aa9.37□□□□□ -0.91
SS18-203ENST00000415083 CFAP206Q8IYR0 622 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms