RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 SPPL2AQ8TCT8 520 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 GIPC3Q8TF64 312 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 IPCEF1Q8WWN9 437 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-205ENST00000410093 THAP11Q96EK4 314 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 SHDQ96IW2 340 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 ZNF607Q96SK3 696 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 SPATA5L1Q9BVQ7 753 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 SEMA3GQ9NS98 782 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 TRNAU1APQ9NX07 287 aaKnown RBP12.9□□□□□ -0.34
LIMS1-205ENST00000410093 LYARQ9NX58 379 aaKnown RBP12.9□□□□□ -0.34
LIMS1-205ENST00000410093 NDUFAF4Q9P032 175 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 CA14Q9ULX7 337 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 POFUT2Q9Y2G5 429 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 GMPPBQ9Y5P6 360 aa12.9□□□□□ -0.34
LIMS1-205ENST00000410093 DOCK9Q9BZ29 2069 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 EME2A4GXA9 379 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-205ENST00000410093 TRIM64BA6NI03 449 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 E9PQ18 207 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 TNFRSF11BO00300 401 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 SLC1A7O00341 560 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 GCM2O75603 506 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-205ENST00000410093 SERPINB7O75635 380 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 SEC14L2O76054 403 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 AKT2P31751 481 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 PIGAP37287 484 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 CRYBA2P53672 197 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 SMIM11AP58511 58 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 CD47Q08722 323 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 CDK5R2Q13319 367 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 KIR2DS3Q14952 304 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 C16orf72Q14CZ0 275 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 PROX2Q3B8N5 592 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 COX20Q5RI15 118 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 PRAMEF8Q5VWM4 474 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 PRAMEF7Q5VXH5 474 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF425Q6IV72 752 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 ISLR2Q6UXK2 745 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 CEACAM20Q6UY09 585 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 CEP68Q76N32 757 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 AMIGO1Q86WK6 493 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 CLVS1Q8IUQ0 354 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-205ENST00000410093 ADGRF3Q8IZF5 1079 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 HS3ST5Q8IZT8 346 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 OR13F1Q8NGS4 319 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 FAM174AQ8TBP5 190 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 KLK6Q92876 244 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 MAL2Q969L2 176 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 SH3GL3Q99963 347 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 TWSG1Q9GZX9 223 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 SOX17Q9H6I2 414 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-205ENST00000410093 CXorf36Q9H7Y0 433 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 LHX9Q9NQ69 397 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 EXD2Q9NVH0 621 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 VNN3Q9NY84 501 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 MOSPD1Q9UJG1 213 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 PSME2Q9UL46 239 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 MAP4K5Q9Y4K4 846 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 PIAS3Q9Y6X2 628 aa12.89□□□□□ -0.35
LIMS1-205ENST00000410093 IGKV1-8A0A0C4DH67 115 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 FEZF1A0PJY2 475 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 FAM221BA6H8Z2 402 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 URADA6NGE7 173 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 IFNW1P05000 195 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ITIH1P19827 911 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 EFNA1P20827 205 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-205ENST00000410093 HIST1H1TP22492 207 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PRKACGP22612 351 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PSMB5P28074 263 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ELK4P28324 431 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PPP2R1BP30154 601 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 RRM2P31350 389 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SLC5A2P31639 672 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ALDH9A1P49189 494 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 CYP4F2P78329 520 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 IL5RAQ01344 420 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 NPRL3Q12980 569 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 RAB39AQ14964 217 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 MICAQ29983 383 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SPDYE7PQ495Y7 208 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 IER5LQ5T953 404 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 MLIPQ5VWP3 458 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 DUS1LQ6P1R4 473 aaKnown RBP12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF852Q6ZMS4 543 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 C6orf120Q7Z4R8 191 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 UBE3DQ7Z6J8 389 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 DEPDC4Q8N2C3 294 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SVOPQ8N4V2 548 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 RAB2BQ8WUD1 216 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 TAMM41Q96BW9 452 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ISOC1Q96CN7 298 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 MS4A6EQ96DS6 147 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 HRASLS5Q96KN8 279 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 MRGPRX1Q96LB2 322 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 NODALQ96S42 347 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 PIP5K1AQ99755 562 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 RIBC2Q9H4K1 309 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 ZNF556Q9HAH1 456 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 FGF22Q9HCT0 170 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SLC35C2Q9NQQ7 365 aa12.88□□□□□ -0.35
LIMS1-205ENST00000410093 SLC2A4RGQ9NR83 387 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms