RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF148Q9UQR1 794 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 SLC17A4Q9Y2C5 497 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 ACACBO00763 2458 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 TEX13CA0A0J9YWL9 993 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 C17orf113A0A1B0GUU1 675 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 C5orf60A6NFR6 353 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 CBY3A6NI87 242 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 CGB1A6NKQ9 187 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 OR5K4A6NMS3 321 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 ERI2A8K979 691 aaKnown RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 AP3B1O00203 1094 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 INPP4BO15327 924 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 SLC25A17O43808 307 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 VEGFDO43915 354 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 HMGCLP35914 325 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 SPAM1P38567 509 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 ACTR1BP42025 376 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 ARSFP54793 590 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 ACTR1AP61163 376 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 SLC18A2Q05940 514 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 SLC1A5Q15758 541 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 PARP6Q2NL67 630 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 C14orf28Q4W4Y0 310 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 CCDC92Q53HC0 331 aaPredicted RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 ENTPD8Q5MY95 495 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 LDLRAP1Q5SW96 308 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 TPRG1LQ5T0D9 272 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 HENMT1Q5T8I9 393 aaKnown RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 ARMC3Q5W041 872 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 ALS2CLQ60I27 953 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 ZNF449Q6P9G9 518 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 KDM7AQ6ZMT4 941 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 NEK10Q6ZWH5 1172 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 MARK2Q7KZI7 788 aaKnown RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 GSTA5Q7RTV2 222 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 CPLX4Q7Z7G2 160 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 TNIP2Q8NFZ5 429 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 FAR1Q8WVX9 515 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 GFM1Q96RP9 751 aaKnown RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 TRIB3Q96RU7 358 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 FICDQ9BVA6 458 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 PARD6BQ9BYG5 372 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 NUF2Q9BZD4 464 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 TCEAL2Q9H3H9 227 aaPredicted RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 MRPL40Q9NQ50 206 aaKnown RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 IL1RAPL1Q9NZN1 696 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 HCN3Q9P1Z3 774 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 TRIM10Q9UDY6 481 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 POLG2Q9UHN1 485 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 PACSIN2Q9UNF0 486 aaPredicted RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 LAMP3Q9UQV4 416 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 CAPN7Q9Y6W3 813 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 LRRK1Q38SD2 2015 aa6.09□□□□□ -1.43
USP40-202ENST00000409945 GOLGA4Q13439 2230 aaKnown RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 TPRP12270 2363 aaKnown RBP6.09□□□□□ -1.43
USP40-202ENST00000409945 GLYATL1P3A0A0U1RQE8 302 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 LOC285095A0A1B0GVY8 99 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 RHODO00212 210 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 TSPAN4O14817 238 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 KMOO15229 486 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 RRP8O43159 456 aaKnown RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 NUDT21O43809 227 aaKnown RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 KCNJ13O60928 360 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 PTP4A3O75365 173 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 RBMXL2O75526 392 aaKnown RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 TMEM63AO94886 807 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 PIRTP0C851 137 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 TCP1P17987 556 aaKnown RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 RBMS1P29558 406 aaKnown RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 PPARGP37231 505 aaPredicted RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 FDFT1P37268 417 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 EIF3IQ13347 325 aaKnown RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 TAF1AQ15573 450 aaPredicted RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 CLPPQ16740 277 aaPredicted RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 SIRPB2Q5JXA9 342 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 LCE1DQ5T752 114 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 MZT2BQ6NZ67 158 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 GUSBP11Q6P575 273 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 DDIASQ8IXT1 998 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 SLC35F3Q8IY50 421 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 ARL14Q8N4G2 192 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 DNAAF3Q8N9W5 541 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 DTX3LQ8TDB6 740 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 HEXDCQ8WVB3 486 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 SNRNP27Q8WVK2 155 aaKnown RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 GLYATL1Q969I3 302 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.09□□□□□ -1.44
USP40-202ENST00000409945 TADA1Q96BN2 335 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 ULK4Q96C45 1275 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 KLHL29Q96CT2 875 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 DCUN1D1Q96GG9 259 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 ZNF514Q96K75 400 aaPredicted RBP6.09□□□□□ -1.44
USP40-202ENST00000409945 NSMCE3Q96MG7 304 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 C19orf43Q9BQ61 176 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 TBL1YQ9BQ87 522 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 CCDC3Q9BQI4 270 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 VPS37BQ9H9H4 285 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 GRHL1Q9NZI5 618 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 TAAR2Q9P1P5 351 aa6.09□□□□□ -1.44
USP40-202ENST00000409945 CHD8Q9HCK8 2581 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms