RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ERI1Q8IV48 349 aaKnown RBP19.1■□□□□ 0.65
USP39-204ENST00000409766 OR4E2Q8NGC2 313 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 CCL4L1Q8NHW4 92 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 SLC38A5Q8WUX1 472 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 ZNF566Q969W8 418 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 ZNF576Q9H609 170 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 SYNPO2LQ9H987 977 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 EBF1Q9UH73 591 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 RAB23Q9ULC3 237 aa19.1■□□□□ 0.65
USP39-204ENST00000409766 NDRG4Q9ULP0 352 aaKnown RBP19.1■□□□□ 0.65
USP39-204ENST00000409766 E9PQ18 207 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 TNFRSF11BO00300 401 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 ERI3O43414 337 aaKnown RBP19.09■□□□□ 0.65
USP39-204ENST00000409766 PRAMEF10O60809 474 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 CHRM5P08912 532 aaPredicted RBP19.09■□□□□ 0.65
USP39-204ENST00000409766 HTR1BP28222 390 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 NDUFS1P28331 727 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 EPHA2P29317 976 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 IL5RAQ01344 420 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 SLC9A5Q14940 896 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 TMEM31Q5JXX7 168 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 TNFAIP8L2Q6P589 184 aaPredicted RBP19.09■□□□□ 0.65
USP39-204ENST00000409766 ABHD17CQ6PCB6 329 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 SPARTQ8N0X7 666 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 TBC1D19Q8N5T2 526 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 SMYD1Q8NB12 490 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 CNIH3Q8TBE1 160 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 LCN9Q8WX39 176 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 GEMIN6Q8WXD5 167 aaKnown RBP19.09■□□□□ 0.65
USP39-204ENST00000409766 KCNC2Q96PR1 638 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 LIN28AQ9H9Z2 209 aaKnown RBP19.09■□□□□ 0.65
USP39-204ENST00000409766 KLF15Q9UIH9 416 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 PCDHGA4Q9Y5G9 962 aa19.09■□□□□ 0.65
USP39-204ENST00000409766 ISM1B1AKI9 464 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 CCDC159P0C7I6 412 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 ITGA2P17301 1181 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 HIST1H1TP22492 207 aaPredicted RBP19.08■□□□□ 0.65
USP39-204ENST00000409766 DCKP27707 260 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 ARFIP1P53367 373 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 TFF2Q03403 129 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 COL19A1Q14993 1142 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 CYP27C1Q4G0S4 372 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 EOGTQ5NDL2 527 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 SLC44A3Q8N4M1 653 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 OR2L5Q8NG80 312 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 OR4C15Q8NGM1 316 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 OR8K5Q8NH50 307 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 ZNF420Q8TAQ5 688 aaPredicted RBP19.08■□□□□ 0.65
USP39-204ENST00000409766 CNDP2Q96KP4 475 aaKnown RBP19.08■□□□□ 0.65
USP39-204ENST00000409766 FANCEQ9HB96 536 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 CD207Q9UJ71 328 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 SNX7Q9UNH6 387 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 KLHL20Q9Y2M5 609 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 ASB4Q9Y574 426 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 GMPPBQ9Y5P6 360 aa19.08■□□□□ 0.65
USP39-204ENST00000409766 CCDC88CQ9P219 2028 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 MAN2B1O00754 1011 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 TNFRSF10CO14798 259 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 TFPTP0C1Z6 253 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 CCT3P49368 545 aaKnown RBP19.08■□□□□ 0.64
USP39-204ENST00000409766 NPRL3Q12980 569 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 SLAMF1Q13291 335 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 DYNC1I2Q13409 638 aaKnown RBP19.08■□□□□ 0.64
USP39-204ENST00000409766 SPDYE7PQ495Y7 208 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 MRM1Q6IN84 353 aaKnown RBP19.08■□□□□ 0.64
USP39-204ENST00000409766 TSPYL5Q86VY4 417 aaPredicted RBP19.08■□□□□ 0.64
USP39-204ENST00000409766 ACOT4Q8N9L9 421 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 MFSD9Q8NBP5 474 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 OR13F1Q8NGS4 319 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 GIPC3Q8TF64 312 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 C12orf43Q96C57 262 aaKnown RBP19.08■□□□□ 0.64
USP39-204ENST00000409766 AMDHD1Q96NU7 426 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 DOK1Q99704 481 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 FAIM2Q9BWQ8 316 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 TMEM168Q9H0V1 697 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 GLIPR2Q9H4G4 154 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 KCNK12Q9HB15 430 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 SLC35C2Q9NQQ7 365 aa19.08■□□□□ 0.64
USP39-204ENST00000409766 PAK1IP1Q9NWT1 392 aaPredicted RBP19.08■□□□□ 0.64
USP39-204ENST00000409766 TCRBV21S2A2A0A5A6 115 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 WASHC1A8K0Z3 465 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 HMGN4O00479 90 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 DNAJB5O75953 348 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 RECKO95980 971 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 GABRG2P18507 467 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 ATP5A1P25705 553 aaKnown RBP19.07■□□□□ 0.64
USP39-204ENST00000409766 ACTR1BP42025 376 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 XCR1P46094 333 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 ACTR1AP61163 376 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 DUSP7Q16829 419 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 TOR1AIP1Q5JTV8 583 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 DNASE1L2Q92874 299 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 PITX2Q99697 317 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 APOL4Q9BPW4 351 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 GABARAPL3Q9BY60 117 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 SH3GLB1Q9Y371 365 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 NAALAD2Q9Y3Q0 740 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 A6NCN8 305 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 LRRC72A6NJI9 287 aa19.07■□□□□ 0.64
USP39-204ENST00000409766 C2CD4DB7Z1M9 353 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms