RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 OR5B12Q96R08 314 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 HDAC8Q9BY41 377 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 TCAF1Q9Y4C2 921 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 ACTL7BQ9Y614 415 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 TTC24A2A3L6 582 aaPredicted RBP7.01□□□□□ -1.29
SCN9A-202ENST00000409435 IDSB3KWA1 339 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 S1PR4O95977 384 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 CSNK2A2P19784 350 aaPredicted RBP7.01□□□□□ -1.29
SCN9A-202ENST00000409435 ENDOUP21128 410 aaKnown RBP7.01□□□□□ -1.29
SCN9A-202ENST00000409435 AHCYP23526 432 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 RAB10P61026 200 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 RHDQ02161 417 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 RPA4Q13156 261 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 SLBPQ14493 270 aaKnown RBP eCLIP7.01□□□□□ -1.29
SCN9A-202ENST00000409435 SPESP1Q6UW49 350 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 OR2L2Q8NH16 312 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 OR8K5Q8NH50 307 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 THAP6Q8TBB0 222 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 GUCD1Q96NT3 240 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 SECISBP2Q96T21 854 aaKnown RBP7.01□□□□□ -1.29
SCN9A-202ENST00000409435 DUSP9Q99956 384 aaKnown RBP7.01□□□□□ -1.29
SCN9A-202ENST00000409435 CDC42EP4Q9H3Q1 356 aaKnown RBP7.01□□□□□ -1.29
SCN9A-202ENST00000409435 SEC14L4Q9UDX3 406 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 SIX4Q9UIU6 781 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 HSPB11Q9Y547 144 aa7.01□□□□□ -1.29
SCN9A-202ENST00000409435 HYAL3O43820 417 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 SASH3O75995 380 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 RPS9P46781 194 aaKnown RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 ATXN1P54253 815 aaKnown RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 PKNOX1P55347 436 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 CDK3Q00526 305 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SQLEQ14534 574 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ANKDD1AQ495B1 522 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ASB18Q6ZVZ8 466 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ACBD4Q8NC06 268 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 C3orf49Q96BT1 292 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF689Q96CS4 500 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 C1GALT1C1Q96EU7 318 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 APOPT1Q96IL0 206 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 CXorf21Q9HAI6 301 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ARMCX1Q9P291 453 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 BTBD17A6NE02 478 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 K7ERQ8 282 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 HSPA12AO43301 675 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 TBX1O43435 398 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 APOC3P02656 99 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 HLA-DQB2P05538 268 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 F3P13726 295 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 CCNOP22674 350 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 AZGP1P25311 298 aaKnown RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 MBTPS1Q14703 1052 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 FLYWCH1Q4VC44 716 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 CPTPQ5TA50 214 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 FAM122CQ6P4D5 195 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 FIP1L1Q6UN15 594 aaKnown RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 LRRN1Q6UXK5 716 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 PARS2Q7L3T8 475 aaKnown RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 ABHD12BQ7Z5M8 362 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 C4orf32Q8N8J7 132 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 OR6N1Q8NGY5 312 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM234Q8WY98 164 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 TNFRSF25Q93038 417 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 HS6ST2Q96MM7 605 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 CD180Q99467 661 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 FABP12A6NFH5 140 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF35P13682 527 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 MSX1P28360 303 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SLC6A4P31645 630 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ACSL1P33121 698 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 CDKN1CP49918 316 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 NCBP2P52298 156 aaKnown RBP eCLIP7□□□□□ -1.29
SCN9A-202ENST00000409435 NKX6-1P78426 367 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 SLC3A1Q07837 685 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 AIMP2Q13155 320 aaKnown RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 ENPP2Q13822 863 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 MLC1Q15049 377 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SLC35G1Q2M3R5 365 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 PLK5Q496M5 336 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF648Q5T619 568 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 QSOX2Q6ZRP7 698 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 BBS12Q6ZW61 710 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 DPPA4Q7L190 304 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SLC22A16Q86VW1 577 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 TMPRSS12Q86WS5 348 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 TCTN2Q96GX1 697 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 KCNN3Q9UGI6 736 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 MBD1Q9UIS9 605 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 EMC9Q9Y3B6 208 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 WDR90Q96KV7 1748 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 FXYD6-FXYD2A0A087WZ82 144 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 A0A0J9YYE9 177 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 FIGNL2A6NMB9 653 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SNX3O60493 162 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 TRBC1P01850 177 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 RAB5CP51148 216 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SHISA6Q6ZSJ9 500 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF516Q92618 1163 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF75CPQ92670 426 aaPredicted RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 BIRC7Q96CA5 298 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SLC25A36Q96CQ1 311 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms