RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 OR52E8Q6IFG1 317 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 MRM1Q6IN84 353 aaKnown RBP13.43□□□□□ -0.26
SKA1-202ENST00000398452 RAB11FIP2Q7L804 512 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 FUNDC1Q8IVP5 155 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 CA13Q8N1Q1 262 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 C7orf57Q8NEG2 295 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 DNAJB8Q8NHS0 232 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 ZFP28Q8NHY6 868 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 RCN3Q96D15 328 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 LIN37Q96GY3 246 aaPredicted RBP13.43□□□□□ -0.26
SKA1-202ENST00000398452 ITCHQ96J02 903 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 TEX37Q96LM6 180 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 BBS4Q96RK4 519 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 ZPBPQ9BS86 351 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 ACTL8Q9H568 366 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 RPF2Q9H7B2 306 aaKnown RBP13.43□□□□□ -0.26
SKA1-202ENST00000398452 ZNF304Q9HCX3 659 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 ENAMQ9NRM1 1142 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 SIDT1Q9NXL6 827 aaKnown RBP13.43□□□□□ -0.26
SKA1-202ENST00000398452 UTS2RQ9UKP6 389 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 KLK13Q9UKR3 277 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 ATG4BQ9Y4P1 393 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 ASB4Q9Y574 426 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 PCDHB3Q9Y5E6 796 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 PCDHA9Q9Y5H5 950 aa13.43□□□□□ -0.26
SKA1-202ENST00000398452 GABRR3A8MPY1 467 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 GYG2O15488 501 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 PDPK1O15530 556 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 PROM1O43490 865 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 CHST10O43529 356 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 ERAL1O75616 437 aaKnown RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 KCNH1O95259 989 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 AIFM1O95831 613 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 KLK3P07288 261 aaPredicted RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 IL12AP29459 219 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 DGKQP52824 942 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 HNRNPH2P55795 449 aaKnown RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 MC1RQ01726 317 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 RUNX2Q13950 521 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 UGT8Q16880 541 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 DNAL1Q4LDG9 190 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 CDCP2Q5VXM1 449 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 OR4F3Q6IEY1 312 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 RHBDD2Q6NTF9 364 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 RIMKLAQ8IXN7 391 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 ARHGAP24Q8N264 748 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 METTL27Q8N6F8 245 aaPredicted RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 AMER3Q8N944 861 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 OR7A2PQ8NGA2 310 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 OR8J2Q8NGG1 315 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 WDR36Q8NI36 951 aaKnown RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 VPS33AQ96AX1 596 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 EXOSC8Q96B26 276 aaKnown RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 ROPN1LQ96C74 230 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 KLHL29Q96CT2 875 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 ZBED6CLQ96FA7 236 aaPredicted RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 NPAS2Q99743 824 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 CTRCQ99895 268 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 ASPSCR1Q9BZE9 553 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 PRDM9Q9NQV7 894 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 TEX10Q9NXF1 929 aaPredicted RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 HCN3Q9P1Z3 774 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 DHCR7Q9UBM7 475 aaKnown RBP13.42□□□□□ -0.26
SKA1-202ENST00000398452 PISDQ9UG56 409 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 ZMIZ1Q9ULJ6 1067 aa13.42□□□□□ -0.26
SKA1-202ENST00000398452 FRYQ5TBA9 3013 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 CACNA1GO43497 2377 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PRSS51A0A1B0GVH4 220 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 A0A1W2PR48 441 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PLD2O14939 933 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 FOXS1O43638 330 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 TBX19O60806 448 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 CPSF4O95639 269 aaKnown RBP13.41□□□□□ -0.26
SKA1-202ENST00000398452 CAPN3P20807 821 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 IL10P22301 178 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PTPN4P29074 926 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 MANFP55145 182 aaKnown RBP13.41□□□□□ -0.26
SKA1-202ENST00000398452 DCDP81605 110 aaKnown RBP13.41□□□□□ -0.26
SKA1-202ENST00000398452 OCA2Q04671 838 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 ABHD18Q0P651 414 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PDE7AQ13946 482 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 LACTB2Q53H82 288 aaPredicted RBP13.41□□□□□ -0.26
SKA1-202ENST00000398452 C6orf163Q5TEZ5 329 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 MFSD4BQ5TF39 518 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 C1orf189Q5VU69 101 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 ANKRD26P1Q6NSI1 321 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PWWP2BQ6NUJ5 590 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 SLC48A1Q6P1K1 146 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 RIPOR1Q6ZS17 1223 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PRSS41Q7RTY9 318 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 CAMKMTQ7Z624 323 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 SLCO6A1Q86UG4 719 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 TMPRSS12Q86WS5 348 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PDSS2Q86YH6 399 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 ZNF595Q8IYB9 648 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 TRIML2Q8N7C3 387 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 FAM47BQ8NA70 645 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 OR4K14Q8NGD5 310 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 OR5T3Q8NGG3 340 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 OR51Q1Q8NH59 317 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms