RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CSF3P09919 207 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 HLA-EP13747 358 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 PTPN6P29350 595 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 CBX5P45973 191 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 SEMG2Q02383 582 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 MFSD13AQ14CX5 517 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 QPRTQ15274 297 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 GPR19Q15760 415 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 TSTQ16762 297 aaKnown RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 IQCCQ4KMZ1 466 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 ZBTB37Q5TC79 503 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 METTL2BQ6P1Q9 378 aaKnown RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 DGLUCYQ7Z3D6 616 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 ZNF605Q86T29 641 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 LAX1Q8IWV1 398 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 ZZZ3Q8IYH5 903 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 TMEM132CQ8N3T6 1108 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 ZNF557Q8N988 423 aaPredicted RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 CHST14Q8NCH0 376 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 OR4F6Q8NGB9 312 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 NECTIN4Q96NY8 510 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 PRRG3Q9BZD7 231 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 ING3Q9NXR8 418 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 SHISA7A6NL88 538 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 C2orf81A6NN90 581 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 OR7A17O14581 309 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 PLA2G10O15496 165 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 IFI30P13284 250 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 AZGP1P25311 298 aaKnown RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 METAP1P53582 386 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 CSTF3Q12996 717 aaKnown RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 SMAD4Q13485 552 aaKnown RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 PDGFRLQ15198 375 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 SSX1Q16384 188 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 LRRC73Q5JTD7 316 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 RETSATQ6NUM9 610 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 PAMR1Q6UXH9 720 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 ZNF782Q6ZMW2 699 aaPredicted RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 Q6ZPB1 254 aaPredicted RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 ZNF551Q7Z340 670 aaPredicted RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 GOLGA7Q7Z5G4 137 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 SERPINA11Q86U17 422 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 FAM9CQ8IZT9 166 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 CD200R1Q8TD46 325 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 HLA-CQ95604 372 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 SH3KBP1Q96B97 665 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 LINGO1Q96FE5 620 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 ZC3HAV1LQ96H79 300 aaKnown RBP10.64□□□□□ -0.71
CUX1-204ENST00000393824 CCDC120Q96HB5 630 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 OR5M11Q96RB7 305 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 KCNN2Q9H2S1 579 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 BRD9Q9H8M2 597 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 HSPB11Q9Y547 144 aa10.64□□□□□ -0.71
CUX1-204ENST00000393824 PLD2O14939 933 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 PROM1O43490 865 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ZNF254O75437 659 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ESR1P03372 595 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 TALDO1P37837 337 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 SNRPD2P62316 118 aaKnown RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 CYP4F2P78329 520 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 TP53BP2Q13625 1128 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 GTF2H2Q13888 395 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 TATDN3Q17R31 274 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.63□□□□□ -0.711e-6■■■■■ 31.5
CUX1-204ENST00000393824 POM121L1PQ3SYA9 428 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 SAXO2Q658L1 398 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 GTF2H2CQ6P1K8 395 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 C22orf39Q6P5X5 142 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 NCEH1Q6PIU2 408 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 CBLL1Q75N03 491 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 EIF3MQ7L2H7 374 aaKnown RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 TRIM46Q7Z4K8 759 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 NLRP8Q86W28 1048 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 YAF2Q8IY57 180 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 LIX1Q8N485 282 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 SLC44A3Q8N4M1 653 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 KRTCAP2Q8N6L1 136 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 OR2A12Q8NGT7 310 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 EEF1AKMT1Q8WVE0 214 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 MAGEB10Q96LZ2 347 aaPredicted RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 HYLS1Q96M11 299 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 KCNC2Q96PR1 638 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 LIN7BQ9HAP6 207 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 RAD18Q9NS91 495 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ZNF226Q9NYT6 803 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 DEC1Q9P2X7 70 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 SLC23A1Q9UHI7 598 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 MAPRE3Q9UPY8 281 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 SLC27A6Q9Y2P4 619 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 CMAHPQ9Y471 501 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 FRYLO94915 3013 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 TICRRQ7Z2Z1 1910 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 TCF20Q9UGU0 1960 aaKnown RBP10.63□□□□□ -0.71
CUX1-204ENST00000393824 ATP6V1G2-DDX39BF2Z307 99 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 EPN2O95208 641 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 LGI1O95970 557 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 CTSLP07711 333 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 KDELR2P33947 212 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 PTGER3P43115 390 aa10.63□□□□□ -0.71
CUX1-204ENST00000393824 ALDH9A1P49189 494 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms