RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 OR1D2P34982 312 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 LIM2P55344 173 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 C19orf57Q0VDD7 668 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 MPEG1Q2M385 716 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 MFSD4BQ5TF39 518 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 CASP12Q6UXS9 341 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 OTOP2Q7RTS6 562 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 LIX1LQ8IVB5 337 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 CAMKK1Q8N5S9 505 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 ZFAND1Q8TCF1 268 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 ASZ1Q8WWH4 475 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 PPCDCQ96CD2 204 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 TMCC3Q9ULS5 477 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 POLR1CO15160 346 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-202ENST00000375299 PLA2G10O15496 165 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 FURINP09958 794 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 TSPAN19P0C672 248 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 GPC1P35052 558 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 SPINT3P49223 89 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 GPLD1P80108 840 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 MC1RQ01726 317 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 EFR3AQ14156 821 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 PYDC2Q56P42 97 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 ZDHHC20Q5W0Z9 365 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 SLC8B1Q6J4K2 584 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 HSDL2Q6YN16 418 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 WDR53Q7Z5U6 358 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-202ENST00000375299 KLHDC8AQ8IYD2 350 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 GPR65Q8IYL9 337 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 BCL7CQ8WUZ0 217 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-202ENST00000375299 NELL2Q99435 816 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 FAM8A1Q9UBU6 413 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 PPIL1Q9Y3C6 166 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 CCDC88CQ9P219 2028 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 PCM1Q15154 2024 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 PSIP1O75475 530 aaKnown RBP20.15■□□□□ 0.82
UPF3A-202ENST00000375299 AP2A2O94973 939 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 GALTP07902 379 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 SOAT1P35610 550 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 P2RX3P56373 397 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 FAPQ12884 760 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 PDE7AQ13946 482 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 PUM1Q14671 1186 aaKnown RBP eCLIP20.15■□□□□ 0.823e-6■■□□□ 11.4
UPF3A-202ENST00000375299 TAF12Q16514 161 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 CCSMST1Q4G0I0 132 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 DDI2Q5TDH0 399 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 ECHDC3Q96DC8 303 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 SAMD11Q96NU1 681 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 MGAT4BQ9UQ53 548 aa20.15■□□□□ 0.82
UPF3A-202ENST00000375299 CPNE3O75131 537 aaKnown RBP20.14■□□□□ 0.82
UPF3A-202ENST00000375299 GBAP04062 536 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 HTR2BP41595 481 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 TM4SF4P48230 202 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 XKP51811 444 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 SLC30A8Q8IWU4 369 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 IL17RCQ8NAC3 791 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 OR8J1Q8NGP2 316 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 MED30Q96HR3 178 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 RNF186Q9NXI6 227 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 GULP1Q9UBP9 304 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 KLHL21Q9UJP4 597 aa20.14■□□□□ 0.82
UPF3A-202ENST00000375299 A0A0G2JMP0 313 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 H3BN98 237 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 GREM1O60565 184 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 SLCO2B1O94956 709 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 CPN2P22792 545 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 SLC9A3P48764 834 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 DSTNP60981 165 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 SEC23BQ15437 767 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 TIGD3Q6B0B8 471 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 C22orf42Q6IC83 251 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 MED27Q6P2C8 311 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 BCDIN3DQ7Z5W3 292 aaKnown RBP20.14■□□□□ 0.81
UPF3A-202ENST00000375299 DDX53Q86TM3 631 aaKnown RBP20.14■□□□□ 0.81
UPF3A-202ENST00000375299 METTL3Q86U44 580 aaKnown RBP20.14■□□□□ 0.81
UPF3A-202ENST00000375299 HS6ST3Q8IZP7 471 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 UBE2J2Q8N2K1 259 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 TCEANCQ8N8B7 351 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 DBF4BQ8NFT6 615 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 ADAMTS19Q8TE59 1207 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 SUV39H2Q9H5I1 410 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 GPBP1L1Q9HC44 474 aaPredicted RBP20.14■□□□□ 0.81
UPF3A-202ENST00000375299 CASP8AP2Q9UKL3 1982 aa20.14■□□□□ 0.81
UPF3A-202ENST00000375299 HEPACAM2A8MVW5 462 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 SGTAO43765 313 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 BNIP3LO60238 219 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 ZNF780AO75290 641 aaPredicted RBP20.13■□□□□ 0.81
UPF3A-202ENST00000375299 CPEP16870 476 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 RPL3P39023 403 aaKnown RBP20.13■□□□□ 0.81
UPF3A-202ENST00000375299 IL12RB1P42701 662 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 GSTM5P46439 218 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 C2orf80Q0P641 193 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 LMAN2Q12907 356 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 OCLNQ16625 522 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.13■□□□□ 0.812e-6■■□□□ 11.5
UPF3A-202ENST00000375299 LCN1P1Q5VSP4 162 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 SYCE2Q6PIF2 218 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 USP30Q70CQ3 517 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 COMMD6Q7Z4G1 85 aa20.13■□□□□ 0.81
UPF3A-202ENST00000375299 YIPF7Q8N8F6 280 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms