RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CXCR6O00574 342 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 FLRT2O43155 660 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 MT-ND1P03886 318 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 PRPS1L1P21108 318 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 IDSP22304 550 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 GRK6P43250 576 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 IFITM2Q01629 132 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 SLC14A1Q13336 389 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 RSPO4Q2I0M5 234 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 DPY19L1Q2PZI1 675 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 NOXRED1Q6NXP6 359 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 CALHM3Q86XJ0 350 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 SLC37A2Q8TED4 501 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 CYGBQ8WWM9 190 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 JPH3Q8WXH2 748 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 METTL2AQ96IZ6 378 aaKnown RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 TSSK3Q96PN8 268 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 HOXD1Q9GZZ0 328 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 NTN4Q9HB63 628 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 QPCTLQ9NXS2 382 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 STOX2Q9P2F5 926 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 U3KQA8 63 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 C17orf113A0A1B0GUU1 675 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 CPED1A4D0V7 1026 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 A6NCN8 305 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 UPK1AO00322 258 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 MYO1DO94832 1006 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 F3P13726 295 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 HSD3B1P14060 373 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 HOXB9P17482 250 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 IL1RNP18510 177 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 CD22P20273 847 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 TACR1P25103 407 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 HSD3B2P26439 372 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 HNF4AP41235 474 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 ADARB1P78563 741 aaKnown RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 SRSF11Q05519 484 aaKnown RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 SF3B4Q15427 424 aaKnown RBP eCLIP13.6□□□□□ -0.233e-7■■□□□ 12.6
HMGA1-203ENST00000374116 PGS1Q32NB8 556 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 CCSMST1Q4G0I0 132 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 CYBRD1Q53TN4 286 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 XKR6Q5GH73 641 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 BROXQ5VW32 411 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 AGTRAPQ6RW13 159 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 VASH1Q7L8A9 365 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 LACC1Q8IV20 430 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 PIK3C3Q8NEB9 887 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 WDR20Q8TBZ3 569 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 FAM162AQ96A26 154 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 FAM120BQ96EK7 910 aaKnown RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 FOPNLQ96NB1 174 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 OR4K3Q96R72 315 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 INSM2Q96T92 566 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 PKP4Q99569 1192 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 SP140LQ9H930 580 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 FBXO8Q9NRD0 319 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 IMP3Q9NV31 184 aaKnown RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 ZNF624Q9P2J8 865 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 DNAJB9Q9UBS3 223 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 PPT2Q9UMR5 302 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 CARD8Q9Y2G2 431 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 PCDHGB2Q9Y5G2 931 aa13.6□□□□□ -0.23
HMGA1-203ENST00000374116 DNMT3AQ9Y6K1 912 aaPredicted RBP13.6□□□□□ -0.23
HMGA1-203ENST00000374116 DCDC2BA2VCK2 349 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 H0YIV9 168 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 PPM1DO15297 605 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 ABCB7O75027 752 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 C1orf105O95561 183 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 ALPPL2P10696 532 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 NAT1P18440 290 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 TCEA1P23193 301 aaKnown RBP13.59□□□□□ -0.23
HMGA1-203ENST00000374116 GSTM2P28161 218 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 IMPA1P29218 277 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 TRPC1P48995 793 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 GZMMP51124 257 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 ALDH3A2P51648 485 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 DMPKQ09013 629 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 ABHD18Q0P651 414 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 GTDC1Q4AE62 458 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 SMUG1Q53HV7 270 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 GRHL2Q6ISB3 625 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 ZCCHC8Q6NZY4 707 aaKnown RBP13.59□□□□□ -0.23
HMGA1-203ENST00000374116 GUSBP11Q6P575 273 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 MFSD4AQ8N468 514 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 ARL14Q8N4G2 192 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 NETO1Q8TDF5 533 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 TMBIM1Q969X1 311 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 FKBP10Q96AY3 582 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 SLC47A1Q96FL8 570 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 C12orf66Q96MD2 445 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 DUSP23Q9BVJ7 150 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 OR52A5Q9H2C5 316 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 MAGIXQ9H6Y5 334 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 SIAEQ9HAT2 523 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 SLC6A13Q9NSD5 602 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 SACM1LQ9NTJ5 587 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 DCAF13Q9NV06 445 aaKnown RBP13.59□□□□□ -0.23
HMGA1-203ENST00000374116 IFT80Q9P2H3 777 aaPredicted RBP13.59□□□□□ -0.23
HMGA1-203ENST00000374116 VPS29Q9UBQ0 182 aa13.59□□□□□ -0.23
HMGA1-203ENST00000374116 CDV3Q9UKY7 258 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms