RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SLAMF1Q13291 335 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 MTFR2Q6P444 385 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 HSDL2Q6YN16 418 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 Q6ZPB1 254 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 TAOK1Q7L7X3 1001 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 ZCCHC7Q8N3Z6 543 aaKnown RBP20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 PTGR2Q8N8N7 351 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 POGLUT1Q8NBL1 392 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 CCDC120Q96HB5 630 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 MS4A12Q9NXJ0 267 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 PSD3Q9NYI0 1048 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 MYOTQ9UBF9 498 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 SH3BGRL2Q9UJC5 107 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 ZNF180Q9UJW8 692 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 RNF11Q9Y3C5 154 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 C17orf105B2RV13 164 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 KLRC4-KLRK1H3BQV0 150 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 KIF2AO00139 706 aaPredicted RBP20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 OR2J2O76002 312 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 KRT38O76015 456 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 TNNI3P19429 210 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 MEOX1P50221 254 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 C3AR1Q16581 482 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 CPSF6Q16630 551 aaKnown RBP eCLIP20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 C16orf47Q6ZP98 133 aaPredicted RBP20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 SPPL2CQ8IUH8 684 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 SULF2Q8IWU5 870 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 ZNF321PQ8N8H1 164 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 OR8K3Q8NH51 312 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 SLC2A12Q8TD20 617 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 ITLN2Q8WWU7 325 aaPredicted RBP20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 MAGED4Q96JG8 741 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 ZNF717Q9BY31 904 aaPredicted RBP20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 OR8D2Q9GZM6 311 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 LIN28AQ9H9Z2 209 aaKnown RBP20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 PHF11Q9UIL8 331 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 TMCO1Q9UM00 188 aa20.17■□□□□ 0.82
CCDC28B-201ENST00000373602 POC1B-GALNT4F8VUJ3 575 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 STX16-NPEPL1H3BU86 382 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 STX16O14662 325 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 PEX1O43933 1283 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 FGF17O60258 216 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 ETHE1O95571 254 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 COL6A2P12110 1019 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 CNTFP26441 200 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 HNRNPH2P55795 449 aaKnown RBP20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 TNFRSF17Q02223 184 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 CUL3Q13618 768 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 TSNAXIP1Q2TAA8 658 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 MDGA2Q7Z553 956 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 GPR180Q86V85 440 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 OR4N5Q8IXE1 308 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 GPALPP1Q8IXQ4 340 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 GHDCQ8N2G8 530 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 WDR20Q8TBZ3 569 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 DCAKDQ8WVC6 231 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 RPF2Q9H7B2 306 aaKnown RBP20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 NOL11Q9H8H0 719 aaKnown RBP20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 TIMMDC1Q9NPL8 285 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 XPR1Q9UBH6 696 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 ATG4BQ9Y4P1 393 aa20.16■□□□□ 0.82
CCDC28B-201ENST00000373602 A0A087WUV0 522 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 TRIM49D1C9J1S8 452 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 FOXE1O00358 373 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 OR7A17O14581 309 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 CLDN9O95484 217 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 BSGP35613 385 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 STT3AP46977 705 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 HK2P52789 917 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 RNF4P78317 190 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 BIKQ13323 160 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 ART3Q13508 389 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 MRM1Q6IN84 353 aaKnown RBP20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 CHERPQ8IWX8 916 aaKnown RBP20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 SLC34A3Q8N130 599 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 UHMK1Q8TAS1 419 aaKnown RBP20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 ZNF721Q8TF20 911 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 ASB15Q8WXK1 588 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 TANKQ92844 425 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 PHF21BQ96EK2 531 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 RASL10BQ96S79 203 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 DDX31Q9H8H2 851 aaKnown RBP20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 TINAGQ9UJW2 476 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 PPT2Q9UMR5 302 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 ERVK-11Q9UQG0 969 aa20.15■□□□□ 0.82
CCDC28B-201ENST00000373602 A0A0A6YYD5 115 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 A8MVJ9 347 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 WWP2O00308 870 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 PROM1O43490 865 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 COX7A2P14406 83 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 TLX1P31314 330 aaPredicted RBP20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 NEK2P51955 445 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 C18orf63Q68DL7 685 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 RPTNQ6XPR3 784 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 MRGPRGQ86SM5 289 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 ZNF808Q8N4W9 903 aaPredicted RBP20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 ZFP62Q8NB50 900 aaPredicted RBP20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 OR52B6Q8NGF0 335 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 OR5L2Q8NGL0 311 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 C16orf52Q8NHV5 167 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms