RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MLC1Q15049 377 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 LRRC23Q53EV4 343 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-202ENST00000372405 ARMC6Q6NXE6 501 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 SLC48A1Q6P1K1 146 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 CAMKVQ8NCB2 501 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 SUN3Q8TAQ9 357 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 ZBED6CLQ96FA7 236 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-202ENST00000372405 SLC47A1Q96FL8 570 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 AMDHD1Q96NU7 426 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 UGT2B28Q9BY64 529 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 OAZ3Q9UMX2 235 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 BDP1A6H8Y1 2624 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 TMEM229AB2RXF0 380 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 KIF1CO43896 1103 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 PRSS23O95084 383 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 EIF2S1P05198 315 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 PROS1P07225 676 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 UQCRBP14927 111 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 PCGF2P35227 344 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 CTSKP43235 329 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 RPS26P62854 115 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 EEF1A2Q05639 463 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 FADDQ13158 208 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 RUNX2Q13950 521 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 MAP7Q14244 749 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 SHBQ15464 509 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 DEFB110Q30KQ9 67 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 C14orf28Q4W4Y0 310 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 SAXO2Q658L1 398 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 TMEM214Q6NUQ4 689 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 SDR16C5Q8N3Y7 309 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 AVL9Q8NBF6 648 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 RERGQ96A58 199 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 NEURL3Q96EH8 262 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 C10orf90Q96M02 699 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 BTBD9Q96Q07 612 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 SLC38A3Q99624 504 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 MAP3K3Q99759 626 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 NEUROD4Q9HD90 331 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 STARD5Q9NSY2 213 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 LYARQ9NX58 379 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 FAF1Q9UNN5 650 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 SLC9B1P1A6NJY1 282 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 MYO1GB0I1T2 1018 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 ERAL1O75616 437 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 LDLRP01130 860 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 CDH3P22223 829 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 VSX2P58304 361 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 FOLH1Q04609 750 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 SUZ12Q15022 739 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 PMS2CLQ68D20 193 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 PPP4R4Q6NUP7 873 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 IRGCQ6NXR0 463 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 WDR5BQ86VZ2 330 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 ARHGEF39Q8N4T4 335 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 CBR4Q8N4T8 237 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 C19orf47Q8N9M1 422 aaKnown RBP13.03□□□□□ -0.32
PTPRF-202ENST00000372405 C11orf65Q8NCR3 313 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 PYURFQ96I23 114 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF597Q96LX8 424 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF681Q96N22 645 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 CSF3RQ99062 836 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 NLNQ9BYT8 704 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 TMEM38AQ9H6F2 299 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 NCOR1O75376 2440 aa13.03□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF860A6NHJ4 632 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 DLGAP1O14490 977 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 CLOCKO15516 846 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 GUCY1B2O75343 617 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 KRT75O95678 551 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF682O95780 498 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 SEMG1P04279 462 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 C8orf89P0DMQ9 161 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 ALPPL2P10696 532 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 DDX5P17844 614 aaKnown RBP13.02□□□□□ -0.32
PTPRF-202ENST00000372405 ALOX12P18054 663 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 AQP1P29972 269 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 DHPSP49366 369 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-202ENST00000372405 LIM2P55344 173 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 GFERP55789 205 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 OLR1P78380 273 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 VAC14Q08AM6 782 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 GCNT6Q5T4J0 391 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 INTS11Q5TA45 600 aaKnown RBP13.02□□□□□ -0.32
PTPRF-202ENST00000372405 LYSMD4Q5XG99 296 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 ZBTB49Q6ZSB9 765 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 FAM92BQ6ZTR7 304 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 CBLL1Q75N03 491 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 SPRED1Q7Z699 444 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 VTCN1Q7Z7D3 282 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 EID3Q8N140 333 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 CSNK1A1LQ8N752 337 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 SERINC2Q96SA4 455 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-202ENST00000372405 SERHL2Q9H4I8 314 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 MAGIXQ9H6Y5 334 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 ERVMER34-1Q9H9K5 563 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF639Q9UID6 485 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 DAPP1Q9UN19 280 aa13.02□□□□□ -0.32
PTPRF-202ENST00000372405 RNF215Q9Y6U7 377 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms