RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TIMP3P35625 211 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 MAGEA3P43357 314 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 HNRNPFP52597 415 aaKnown RBP12.77□□□□□ -0.37
VPS29-201ENST00000360579 DCAF7P61962 342 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 KCNJ2P63252 427 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 SORDQ00796 357 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 PCBP2Q15366 365 aaKnown RBP eCLIP12.77□□□□□ -0.37
VPS29-201ENST00000360579 SLC22A10Q63ZE4 541 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 TMEM198Q66K66 360 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 TRIM40Q6P9F5 258 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 TMIGD1Q6UXZ0 262 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 CHSY3Q70JA7 882 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 CLNKQ7Z7G1 428 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 LACC1Q8IV20 430 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.77□□□□□ -0.37
VPS29-201ENST00000360579 DND1Q8IYX4 353 aaKnown RBP12.77□□□□□ -0.37
VPS29-201ENST00000360579 TMEM52Q8NDY8 209 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 SLC2A12Q8TD20 617 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 CCT6BQ92526 530 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 SERINC2Q96SA4 455 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 ALOXE3Q9BYJ1 711 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 PITHD1Q9GZP4 211 aaPredicted RBP12.77□□□□□ -0.37
VPS29-201ENST00000360579 ZNF395Q9H8N7 513 aaPredicted RBP12.77□□□□□ -0.37
VPS29-201ENST00000360579 PLEKHF2Q9H8W4 249 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 SEMA4BQ9NPR2 832 aaPredicted RBP12.77□□□□□ -0.37
VPS29-201ENST00000360579 DAPP1Q9UN19 280 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 SLC22A14Q9Y267 594 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 A0A0G2JN53 185 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 C17orf105B2RV13 164 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 CYR61O00622 381 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 ARHGEF9O43307 516 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 EPPINO95925 133 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 CCDC175P0C221 793 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 PGAM1P18669 254 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 HNRNPH1P31943 449 aaKnown RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 PIGAP37287 484 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 HNMTP50135 292 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 MTTPP55157 894 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 LIM2P55344 173 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 NKX6-1P78426 367 aaPredicted RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 TGM3Q08188 693 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 PIGGQ5H8A4 983 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 RBM20Q5T481 1227 aaKnown RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 SEM1Q6ZVN7 128 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 GALNT7Q86SF2 657 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 KRT78Q8N1N4 520 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 LRRC25Q8N386 305 aaPredicted RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 NAXEQ8NCW5 288 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 OR2L5Q8NG80 312 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 NEIL3Q8TAT5 605 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 NUBPLQ8TB37 319 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 SLC22A8Q8TCC7 542 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 PAQR8Q8TEZ7 354 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 HSPBAP1Q96EW2 488 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 PDLIM5Q96HC4 596 aaKnown RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 SIGLEC10Q96LC7 697 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 QRFPRQ96P65 431 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 YIPF4Q9BSR8 244 aa12.76□□□□□ -0.37
VPS29-201ENST00000360579 REXO4Q9GZR2 422 aaKnown RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 COPS7BQ9H9Q2 264 aaPredicted RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 CORO1CQ9ULV4 474 aaPredicted RBP12.76□□□□□ -0.37
VPS29-201ENST00000360579 CLCA1A8K7I4 914 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 DYRK3O43781 588 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 CLEC3AO75596 197 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 TTC4O95801 387 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 AHSGP02765 367 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 C1GALT1C1LP0DN25 315 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 COX7A2P14406 83 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 GABRB3P28472 473 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 PLA2G16P53816 162 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 CRYMQ14894 314 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 ZNF791Q3KP31 576 aaPredicted RBP12.75□□□□□ -0.37
VPS29-201ENST00000360579 ADPRMQ3LIE5 342 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 ACSF3Q4G176 576 aaPredicted RBP12.75□□□□□ -0.37
VPS29-201ENST00000360579 SBSNQ6UWP8 590 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 CNTN4Q8IWV2 1026 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 PM20D2Q8IYS1 436 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 SLC15A4Q8N697 577 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 TNIP2Q8NFZ5 429 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 SREK1Q8WXA9 508 aaKnown RBP12.75□□□□□ -0.37
VPS29-201ENST00000360579 CSF3RQ99062 836 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 CAPS2Q9BXY5 557 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 NT5DC2Q9H857 520 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 SH2D2AQ9NP31 389 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 CNIH4Q9P003 139 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 VWA7Q9Y334 891 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 SPACA6W5XKT8 324 aa12.75□□□□□ -0.37
VPS29-201ENST00000360579 FN1P02751 2386 aaKnown RBP12.74□□□□□ -0.37
VPS29-201ENST00000360579 C15orf38-AP3S2A0A0A6YYH1 394 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 ANKDD1BA6NHY2 528 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 CES2O00748 559 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 ZNF354AO60765 605 aaPredicted RBP12.74□□□□□ -0.37
VPS29-201ENST00000360579 RFPL3SP0C7P2 107 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 CERS1P27544 350 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 CDKL1Q00532 357 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 ASPHQ12797 758 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 SLBPQ14493 270 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS29-201ENST00000360579 PPP1R3AQ16821 1122 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 KCTD19Q17RG1 926 aaPredicted RBP12.74□□□□□ -0.37
VPS29-201ENST00000360579 FAM45BPQ6NSW5 357 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms