RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 HOXD8P13378 290 aaPredicted RBP13.19□□□□□ -0.3
RTN4-202ENST00000337526 PGAM2P15259 253 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 VAMP1P23763 118 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 CTSOP43234 321 aaPredicted RBP13.19□□□□□ -0.3
RTN4-202ENST00000337526 CEBPGP53567 150 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 INHBCP55103 352 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 DEFA5Q01523 94 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 ULK3Q6PHR2 472 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 TMED4Q7Z7H5 227 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 Q8N402 240 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 ASCC1Q8N9N2 400 aaKnown RBP13.19□□□□□ -0.3
RTN4-202ENST00000337526 OR51A7Q8NH64 312 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 MAL2Q969L2 176 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 ITFG2Q969R8 447 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 C20orf27Q9GZN8 174 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 SPHK2Q9NRA0 654 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 ERVK13-1Q9NX77 482 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 PPP6CO00743 305 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 GPM6BQ13491 265 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 ALKBH2Q6NS38 261 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 HMGN2P46Q86SG4 172 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 MCEMP1Q8IX19 187 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 ZNF101Q8IZC7 436 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 SLC5A8Q8N695 610 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 OTUB2Q96DC9 234 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 JSRP1Q96MG2 331 aaPredicted RBP13.19□□□□□ -0.3
RTN4-202ENST00000337526 VAPAQ9P0L0 249 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 IL17CQ9P0M4 197 aa13.19□□□□□ -0.3
RTN4-202ENST00000337526 METTL21EPA6NDL7 271 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 B4DGG1 531 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 GATBO75879 557 aaKnown RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 ZNF20P17024 532 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 OXTRP30559 389 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 MAP2K3P46734 347 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 LRP8Q14114 963 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 RCAN2Q14206 197 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 TSPAN33Q86UF1 283 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 GID4Q8IVV7 300 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 CD200R1Q8TD46 325 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 TMEM174Q8WUU8 243 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SMPDL3BQ92485 455 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 LIPT1Q9Y234 373 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 IFT52Q9Y366 437 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SETD1AO15047 1707 aaKnown RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 STRCQ7RTU9 1775 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 COL16A1Q07092 1604 aaPredicted RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 A0A1B0GVT2 93 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 H3BMQ9 156 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 TEX46H3BTG2 121 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 PRDX3P30048 256 aaKnown RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 NRG3P56975 720 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SEC23BQ15437 767 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 FAM214AQ32MH5 1076 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 CHERPQ8IWX8 916 aaKnown RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 OR5T3Q8NGG3 340 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 RFT1Q96AA3 541 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 MOAP1Q96BY2 351 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 COG8Q96MW5 612 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SLC30A3Q99726 388 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 TMEM246Q9BRR3 403 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 BCAS1O75363 584 aaPredicted RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 RFPL2O75678 378 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SCGNO76038 276 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 MRPL3P09001 348 aaKnown RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 GCGRP47871 477 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SPINT3P49223 89 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 DECR1Q16698 335 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 ERN2Q76MJ5 926 aaKnown RBP13.18□□□□□ -0.3
RTN4-202ENST00000337526 APCDD1Q8J025 514 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SCRN2Q96FV2 425 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 APIPQ96GX9 242 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 NUDT15Q9NV35 164 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 SARDHQ9UL12 918 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 GABRQQ9UN88 632 aa13.18□□□□□ -0.3
RTN4-202ENST00000337526 ZNF860A6NHJ4 632 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 GSRP00390 522 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 HTR1AP08908 422 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 PORP16435 677 aaPredicted RBP13.17□□□□□ -0.3
RTN4-202ENST00000337526 ZNF81P51508 661 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 GTF2IRD2BQ6EKJ0 949 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 GTF2IRD2Q86UP8 949 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 TMEM17Q86X19 198 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 PIANPQ8IYJ0 282 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 LNX2Q8N448 690 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 TMEM151AQ8N4L1 468 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 TTC9BQ8N6N2 239 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 SGIP1Q9BQI5 828 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 SOBPA7XYQ1 873 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 LRRN3E7EW58 273 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 PYCR1P32322 319 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 CD97P48960 835 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 HK3P52790 923 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 CDK5R2Q13319 367 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 SMU1Q2TAY7 513 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 FAM43BQ6ZT52 329 aaPredicted RBP13.17□□□□□ -0.3
RTN4-202ENST00000337526 NRSN1Q8IZ57 195 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 ACVR1CQ8NER5 493 aa13.17□□□□□ -0.3
RTN4-202ENST00000337526 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.17□□□□□ -0.33e-47■□□□□ 9.6
RTN4-202ENST00000337526 LRRN3Q9H3W5 708 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms