RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 WHAMMP3Q1A5X7 153 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 DEPDC1Q5TB30 811 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 OR4C11Q6IEV9 310 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 IL20RBQ6UXL0 311 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 BNC2Q6ZN30 1099 aaPredicted RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 NCCRP1Q6ZVX7 275 aaPredicted RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 OR4N5Q8IXE1 308 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 SLC2A12Q8TD20 617 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 RGMAQ96B86 450 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 CDC42EP4Q9H3Q1 356 aaKnown RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 DMRT3Q9NQL9 472 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 MYOTQ9UBF9 498 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 ADGRE2Q9UHX3 823 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 MEMO1Q9Y316 297 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 KLF2Q9Y5W3 355 aaPredicted RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 NCOA6Q14686 2063 aaPredicted RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 TMEM200CA6NKL6 621 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 HS6ST1O60243 411 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 FGF17O60258 216 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 OR6B1O95007 311 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 SIX3O95343 332 aaPredicted RBP18.13■□□□□ 0.49
LIME1-201ENST00000309546 TUBB4AP04350 444 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 INHBAP08476 426 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 COX7A2P14406 83 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 HTR1EP28566 365 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 SOX3P41225 446 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 SMSP52788 366 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 HK2P52789 917 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 RPS13P62277 151 aaKnown RBP18.13■□□□□ 0.49
LIME1-201ENST00000309546 PCDH1Q08174 1060 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 GTF2H2Q13888 395 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 CPSF6Q16630 551 aaKnown RBP eCLIP18.13■□□□□ 0.49
LIME1-201ENST00000309546 LIPJQ5W064 366 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 GTF2H2CQ6P1K8 395 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 C3P1Q6ZMU1 363 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 CEP128Q6ZU80 1094 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 GOLGA7Q7Z5G4 137 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 GPALPP1Q8IXQ4 340 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 PSD4Q8NDX1 1056 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 AGAP11Q8TF27 550 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 ANKRD9Q96BM1 317 aaPredicted RBP18.13■□□□□ 0.49
LIME1-201ENST00000309546 REPS1Q96D71 796 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 DGAT2Q96PD7 388 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 RASL10BQ96S79 203 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 COPS7AQ9UBW8 275 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 PCDHGA11Q9Y5H2 935 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 EML6Q6ZMW3 1958 aa18.13■□□□□ 0.49
LIME1-201ENST00000309546 CELSR2Q9HCU4 2923 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 A0A1B0GTH9 108 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 CCDC189A1A4V9 331 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 PLPP1O14494 284 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 PRRG2O14669 202 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 PIK3CBP42338 1070 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 RNF4P78317 190 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 PCBP2Q15366 365 aaKnown RBP eCLIP18.12■□□□□ 0.492e-8■□□□□ 8.6
LIME1-201ENST00000309546 TECRLQ5HYJ1 363 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 FGD2Q7Z6J4 655 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 IFT81Q8WYA0 676 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 GPR78Q96P69 363 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 PHF12Q96QT6 1004 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 IPPKQ9H8X2 491 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 DMGDHQ9UI17 866 aaKnown RBP18.12■□□□□ 0.49
LIME1-201ENST00000309546 PHF11Q9UIL8 331 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 IKBKGQ9Y6K9 419 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 CENPEQ02224 2701 aa18.12■□□□□ 0.49
LIME1-201ENST00000309546 G3V3Y1 287 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 KLK8O60259 260 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 PRKRAO75569 313 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 ETHE1O95571 254 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 TPOP07202 933 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 SNRPB2P08579 225 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 STT3AP46977 705 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 PIK3CGP48736 1102 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 HNRNPH2P55795 449 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 TNFRSF17Q02223 184 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 PLGLB1Q02325 96 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 C18orf63Q68DL7 685 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 XKRXQ6PP77 449 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 GPR180Q86V85 440 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 DOLPP1Q86YN1 238 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 TICAM1Q8IUC6 712 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 CHERPQ8IWX8 916 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 SRRM1Q8IYB3 904 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 PLD6Q8N2A8 252 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 MMGT1Q8N4V1 131 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 PTGR2Q8N8N7 351 aaPredicted RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 NOA1Q8NC60 698 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 OR5L2Q8NGL0 311 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 ATP6V1E2Q96A05 226 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 SCYL1Q96KG9 808 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 FMO2Q99518 471 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 RPF2Q9H7B2 306 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 DEPPQ9NTK1 212 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 ZNF358Q9NW07 568 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 MS4A12Q9NXJ0 267 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 RNF11Q9Y3C5 154 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 TNPO3Q9Y5L0 923 aaKnown RBP18.11■□□□□ 0.49
LIME1-201ENST00000309546 ITPR2Q14571 2701 aa18.11■□□□□ 0.49
LIME1-201ENST00000309546 FAM166BA8MTA8 275 aa18.1■□□□□ 0.49
LIME1-201ENST00000309546 H0YIV9 168 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms