RNA–Protein interactions for RNA: ENST00000295718.6

PTPRN-201, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRN, Length 3,784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-201ENST00000295718 CNIH2Q6PI25 160 aa13.83□□□□□ -0.19
PTPRN-201ENST00000295718 USP50Q70EL3 339 aaPredicted RBP13.83□□□□□ -0.19
PTPRN-201ENST00000295718 DNAJC5GQ8N7S2 189 aa13.83□□□□□ -0.19
PTPRN-201ENST00000295718 SLC43A3Q8NBI5 491 aa13.83□□□□□ -0.19
PTPRN-201ENST00000295718 OR7G3Q8NG95 312 aa13.83□□□□□ -0.19
PTPRN-201ENST00000295718 RAET1EQ8TD07 263 aa13.83□□□□□ -0.19
PTPRN-201ENST00000295718 PRR14Q9BWN1 585 aa13.83□□□□□ -0.19
PTPRN-201ENST00000295718 ANKRD31Q8N7Z5 1873 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 SYN3O14994 580 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 HPGDSO60760 199 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 OR5F1O95221 314 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 CKBP12277 381 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 PRG2P13727 222 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 SERINC5Q86VE9 423 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 VWA5B2Q8N398 1253 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 DENND6BQ8NEG7 585 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 NEIL3Q8TAT5 605 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 POP5Q969H6 163 aaKnown RBP13.83□□□□□ -0.2
PTPRN-201ENST00000295718 RAD51AP1Q96B01 352 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 TRIB3Q96RU7 358 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 ZIC5Q96T25 663 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 ELAC1Q9H777 363 aaKnown RBP13.83□□□□□ -0.2
PTPRN-201ENST00000295718 TMEM39AQ9NV64 488 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 GRXCR2A6NFK2 248 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 CENPBD1B2RD01 187 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 PGRMC2O15173 223 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 SMAD9O15198 467 aaKnown RBP13.83□□□□□ -0.2
PTPRN-201ENST00000295718 AKR1D1P51857 326 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 CDK10Q15131 360 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 SPRYD7Q5W111 196 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 CDC73Q6P1J9 531 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 CRTC1Q6UUV9 634 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 TPRG1Q6ZUI0 275 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 RBM45Q8IUH3 476 aaKnown RBP13.83□□□□□ -0.2
PTPRN-201ENST00000295718 WFDC5Q8TCV5 224 aa13.83□□□□□ -0.2
PTPRN-201ENST00000295718 MRPL17Q9NRX2 175 aaKnown RBP13.83□□□□□ -0.2
PTPRN-201ENST00000295718 EEF1E1O43324 174 aaKnown RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ATG13O75143 517 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 AOAHP28039 575 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 PTGS2P35354 604 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 BMPR1AP36894 532 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 DGKGP49619 791 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 CSRP3P50461 194 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ACLYP53396 1101 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 BNC1Q01954 994 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 RING1Q06587 406 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ZNF763Q0D2J5 394 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 MBTPS1Q14703 1052 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 AFMIDQ63HM1 303 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 HSDL2Q6YN16 418 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 COMMD6Q7Z4G1 85 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 FGD2Q7Z6J4 655 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 CCDC71Q8IV32 467 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 SLC30A8Q8IWU4 369 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 OXR1Q8N573 874 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 PCSK9Q8NBP7 692 aaKnown RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 OR51G2Q8NGK0 314 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 SLC22A12Q96S37 553 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 CCDC32Q9BV29 185 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ABCG5Q9H222 651 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 REEP4Q9H6H4 257 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 GALNT9Q9HCQ5 603 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ZDHHC4Q9NPG8 344 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 FBXW2Q9UKT8 454 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 GRIP1Q9Y3R0 1128 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 TRIP12Q14669 1992 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ZNF623O75123 536 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 OR12D1P0DN82 309 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 JUNDP17535 347 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 DRD5P21918 477 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ALAS2P22557 587 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 CD6P30203 668 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 HNMTP50135 292 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 DBPQ10586 325 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 LASP1Q14847 261 aaKnown RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 POU4F3Q15319 338 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 PDZD3Q86UT5 571 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 MMP21Q8N119 569 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 SAMD12Q8N8I0 201 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 TP53I13Q8NBR0 393 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 NLGN4YQ8NFZ3 816 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 WDR48Q8TAF3 677 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 KATNBL1Q9H079 304 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 KLHL28Q9NXS3 571 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 STUB1Q9UNE7 303 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 PPIEQ9UNP9 301 aaKnown RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 TIA1P31483 386 aaKnown RBP eCLIP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 CDH11P55287 796 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 ZNF740Q8NDX6 193 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 IL17RDQ8NFM7 739 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 C12orf66Q96MD2 445 aa13.82□□□□□ -0.2
PTPRN-201ENST00000295718 CCDC59Q9P031 241 aaKnown RBP13.82□□□□□ -0.2
PTPRN-201ENST00000295718 A0A1W2PRU2 124 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 GNB5O14775 395 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 OAZ2O95190 189 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 MRPL3P09001 348 aaKnown RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 CYP2A6P11509 494 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 CD70P32970 193 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 TGFBR2P37173 567 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 ZNF91Q05481 1191 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms