RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FOLH1Q04609 750 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 TBPL2Q6SJ96 375 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SERPINA11Q86U17 422 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 NFKBIDQ8NI38 313 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SOX17Q9H6I2 414 aaPredicted RBP15.61■□□□□ 0.09
USP4-201ENST00000265560 SLC35C2Q9NQQ7 365 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 DCAF13Q9NV06 445 aaKnown RBP15.61■□□□□ 0.09
USP4-201ENST00000265560 IRAK4Q9NWZ3 460 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 hCG_2039718K7EN88 272 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 HNRNPRO43390 633 aaKnown RBP15.61■□□□□ 0.09
USP4-201ENST00000265560 TNFSF14O43557 240 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 PROS1P07225 676 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 MRPS35P82673 323 aaKnown RBP15.61■□□□□ 0.09
USP4-201ENST00000265560 BNC1Q01954 994 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 VAC14Q08AM6 782 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 LTB4RQ15722 352 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 GPR19Q15760 415 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SPATS1Q496A3 300 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 TMTC4Q5T4D3 741 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 OR5D16Q8NGK9 328 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 PHF12Q96QT6 1004 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 SARGQ9BW04 601 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 LRIT1Q9P2V4 623 aa15.61■□□□□ 0.09
USP4-201ENST00000265560 A8MU76 341 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 PATE3B3GLJ2 98 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 SGK494L7N484 410 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 VILLO15195 856 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 FKBP9O95302 570 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 ZNF23P17027 643 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 CRYBA2P53672 197 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 PCBP4P57723 403 aaKnown RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 FAM98BQ52LJ0 330 aaKnown RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 WDR45BQ5MNZ6 344 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 FKBP9P1Q75LS8 142 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 GPR155Q7Z3F1 870 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 IQCHQ86VS3 1027 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 KAT2AQ92830 837 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 DUS3LQ96G46 650 aaKnown RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 DUSP15Q9H1R2 295 aaPredicted RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 MUC13Q9H3R2 512 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 RNF215Q9Y6U7 377 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 PROM1O43490 865 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 PEX1O43933 1283 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 LDB3O75112 727 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 SCELO95171 688 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 RPL3P39023 403 aaKnown RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 RPS26P11Q5JNZ5 115 aaPredicted RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 PRR23CQ6ZRP0 262 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 CSNK1A1LQ8N752 337 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 MTERF3Q96E29 417 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 EQTNQ9NQ60 294 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 SIRT3Q9NTG7 399 aaPredicted RBP15.6■□□□□ 0.09
USP4-201ENST00000265560 TMEM9Q9P0T7 183 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 POMT2Q9UKY4 750 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 NAALAD2Q9Y3Q0 740 aa15.6■□□□□ 0.09
USP4-201ENST00000265560 IGHV5-51A0A0C4DH38 117 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 RHPN2P1A8MT19 583 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 GCM2O75603 506 aaPredicted RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 ACADSP16219 412 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 KDELR2P33947 212 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 HNRNPFP52597 415 aaKnown RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 LYSMD4Q5XG99 296 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 MRM1Q6IN84 353 aaKnown RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 TMEM107Q6UX40 140 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 HORMAD2Q8N7B1 307 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 TRIML2Q8N7C3 387 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 SMYD1Q8NB12 490 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 TM4SF19Q96DZ7 209 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 AMDHD1Q96NU7 426 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 NLNQ9BYT8 704 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 ENTPD2Q9Y5L3 495 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 EP300Q09472 2414 aaPredicted RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 LAMTOR5O43504 91 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 CDC123O75794 336 aaPredicted RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 MED26O95402 600 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 ZCCHC18P0CG32 403 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 PRKACGP22612 351 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 CCT8P50990 548 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 TLDC1Q6P9B6 456 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 CEACAM20Q6UY09 585 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 TNIP2Q8NFZ5 429 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 OR9A4Q8NGU2 314 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 CNBD2Q96M20 576 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 CHST8Q9H2A9 424 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 NTN4Q9HB63 628 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 SOHLH2Q9NX45 425 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 ADAM29Q9UKF5 820 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 MAPRE3Q9UPY8 281 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 PCDHGA2Q9Y5H1 932 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 HRO43593 1189 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 LDLRP01130 860 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 RAP2AP10114 183 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 YAP1P46937 504 aaKnown RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 OR1E2P47887 323 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 FASLGP48023 281 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 CCT3P49368 545 aaKnown RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 C6orf120Q7Z4R8 191 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 SLC35F3Q8IY50 421 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 MAML2Q8IZL2 1156 aaPredicted RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms