RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 AOC2O75106 756 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 C1RP00736 705 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OSMP13725 252 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TNFSF8P32971 234 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM69Q5SWH9 247 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TPGS1Q6ZTW0 290 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ACBD7Q8N6N7 88 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ADAMTS15Q8TE58 950 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MYLIPQ8WY64 445 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 P2RY13Q9BPV8 354 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GABARAPL1Q9H0R8 117 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SLC12A8A0AV02 714 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 HSBP1L1C9JCN9 74 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ATG12O94817 140 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 IFNA5P01569 189 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 FOSL2P15408 326 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 VAMP1P23763 118 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TAF13Q15543 124 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MBOAT1Q6ZNC8 495 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ASPGQ86U10 573 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CRYBG2Q8N1P7 616 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ACOT11Q8WXI4 607 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 LRFN5Q96NI6 719 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ACBD6Q9BR61 282 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 COLEC11Q9BWP8 271 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NELFAQ9H3P2 528 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CERS4Q9HA82 394 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CHRAC1Q9NRG0 131 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ERVK13-1Q9NX77 482 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PPP1R14DQ9NXH3 145 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PPIGQ13427 754 aaKnown RBP eCLIP4.5□□□□□ -1.698e-7■■■□□ 15.7
SCN1A-220ENST00000641603 NPY5RQ15761 445 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 XKR4Q5GH76 650 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OTUD1Q5VV17 481 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 FAM205BPQ63HN1 556 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF574Q6ZN55 896 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 VN1R5Q7Z5H4 357 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM135Q86UB9 458 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NSMAFQ92636 917 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 LRCH3Q96II8 777 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CMTM3Q96MX0 182 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SLC25A21Q9BQT8 299 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TPT1P8Q9HAU6 139 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SGK2Q9HBY8 427 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 RANGRFQ9HD47 186 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GPRC5CQ9NQ84 441 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SNRPGP15A8MWD9 76 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 D6RAR5 112 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 RFXAPO00287 272 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 AHSA1O95433 338 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ALPPP05187 535 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 AKAIN1P0CW23 69 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PSMB1P20618 241 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CD34P28906 385 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 KDELR2P33947 212 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MEOX2P50222 304 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SORDQ00796 357 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GXYLT1Q4G148 440 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 UNC5DQ6UXZ4 953 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OR10H5Q8NGA6 315 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GTPBP3Q969Y2 492 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ASB6Q9NWX5 421 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NENFQ9UMX5 172 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CAMK2AQ9UQM7 478 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF821O75541 412 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BEST1O76090 585 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GRM5P41594 1212 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CPSF6Q16630 551 aaKnown RBP eCLIP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BCL7AQ4VC05 210 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FAM162BQ5T6X4 162 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF614Q8N883 585 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 STT3BQ8TCJ2 826 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 RSPRY1Q96DX4 576 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SLC35G5Q96KT7 338 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OR2M4Q96R27 311 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MMP19Q99542 508 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CENPOQ9BU64 300 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SLC2A11Q9BYW1 496 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 APMAPQ9HDC9 416 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF275Q9NSD4 429 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ELOA3CA0A087WX78 387 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 NPEPPSL1A6NEC2 478 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TOR1AO14656 332 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 AMHP03971 560 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MAGEB1P43366 347 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CLCN3P51790 818 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 LRRC26Q2I0M4 334 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FAM214AQ32MH5 1076 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 C6orf136Q5SQH8 315 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FOXB2Q5VYV0 432 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PDE12Q6L8Q7 609 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 MAMDC4Q6UXC1 1216 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CHRDL2Q6WN34 429 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 AQP11Q8NBQ7 271 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF680Q8NEM1 530 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OR2T33Q8NG76 320 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CNIH3Q8TBE1 160 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BRINP2Q9C0B6 783 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OSBPL2Q9H1P3 480 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 DCAF13Q9NV06 445 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms