RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 HERVK_113P62684 666 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 HERVK_113P63132 956 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 ERVK-8P63133 956 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 LCP2Q13094 533 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 FGL2Q14314 439 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 GRB7Q14451 532 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 PTPRCAPQ14761 206 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 TMEM201Q5SNT2 666 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 RABEPKQ7Z6M1 372 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 NPAS4Q8IUM7 802 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 PRSS58Q8IYP2 241 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 ZSWIM2Q8NEG5 633 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 OR5M3Q8NGP4 307 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 OR4K15Q8NH41 348 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 OR1E3Q8WZA6 343 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 NTAN1Q96AB6 310 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 OR1F2PQ96R84 312 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 TUBA1CQ9BQE3 449 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 ERVK-6Q9BXR3 956 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 DUSP16Q9BY84 665 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 SLC2A11Q9BYW1 496 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 OR2AG1Q9H205 316 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 ETNK2Q9NVF9 386 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 BET1LQ9NYM9 111 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 DDX20Q9UHI6 824 aaKnown RBP5.82□□□□□ -1.48
SCN1A-212ENST00000636194 PPLO60437 1756 aa5.82□□□□□ -1.48
SCN1A-212ENST00000636194 A0A0G2JLW4 131 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 LOC102723971A0A1B0GUV8 181 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RAB19A4D1S5 217 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 NPEPPSL1A6NEC2 478 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 ADAMTS4O75173 837 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RGS9O75916 674 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 P04436 131 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 GLI1P08151 1106 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 INSRRP14616 1297 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 PORP16435 677 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 GOT1P17174 413 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 MAGP20916 626 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 L1CAMP32004 1257 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RAC1P63000 192 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 PHC1P78364 1004 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 C14orf28Q4W4Y0 310 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 OR2M7Q8NG81 312 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 WFIKKN2Q8TEU8 576 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 C11orf84Q9BUA3 381 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 MRI1Q9BV20 369 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 F5H0A9 414 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 XPNPEP2O43895 674 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 TPST2O60704 377 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 CHRNB2P17787 502 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 PRDX3P30048 256 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 GRM5P41594 1212 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 MRPL19P49406 292 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 EEFSECP57772 596 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 CLVS2Q5SYC1 327 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 HEPHL1Q6MZM0 1159 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 KIF18BQ86Y91 864 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 NRROSQ86YC3 692 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 PCDH20Q8N6Y1 951 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 MARCH10Q8NA82 808 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 TFB2MQ9H5Q4 396 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 WDR26Q9H7D7 661 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 CUTCQ9NTM9 273 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 SUSD2Q9UGT4 822 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 ZNF230Q9UIE0 474 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RPH3ALQ9UNE2 315 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 USP6P35125 1406 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 ZNF608Q9ULD9 1512 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RPS10-NUDT3A0A1W2PQS6 291 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 SIGLEC16A6NMB1 481 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 SUSD5O60279 629 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RPP40O75818 363 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 NUDT3O95989 172 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 GABRR2P28476 465 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 CSN1S1P47710 185 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 GPR143P51810 404 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 TROAPQ12815 778 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 KLF10Q13118 480 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 ATG9BQ674R7 924 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 BRICD5Q6PL45 260 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 NDFIP1Q9BT67 221 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 ARNT2Q9HBZ2 717 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 FBXO6Q9NRD1 293 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 AGPAT5Q9NUQ2 364 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 FLRT1Q9NZU1 646 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 WDR45Q9Y484 360 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RPP14O95059 124 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 AZGP1P25311 298 aaKnown RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 MLLT10P55197 1068 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 CDH12P55289 794 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 RPA4Q13156 261 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 BLNKQ8WV28 456 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 GIMAP1Q8WWP7 306 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 ZKSCAN4Q969J2 545 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-212ENST00000636194 C7orf34Q96L11 122 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 SEZ6LQ9BYH1 1024 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 MTG2Q9H4K7 406 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 GFOD1Q9NXC2 390 aa5.81□□□□□ -1.48
SCN1A-212ENST00000636194 A0A1W2PPV4 95 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms