RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZNF717Q9BY31 904 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 RHBGQ9H310 441 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 NMNAT1Q9HAN9 279 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 FZD3Q9NPG1 666 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 SPATA7Q9P0W8 599 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 ANKMY1Q9P2S6 941 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 NDOR1Q9UHB4 597 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 HCFC2Q9Y5Z7 792 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 M0R129 80 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 CACNB4O00305 520 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 SLC9A3R1O14745 358 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 FFAR1O14842 300 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 TBX6O95947 436 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 ADAP00813 363 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 CLTBP09497 229 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 CSF2RAP15509 400 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 DDCP20711 480 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 ITGB7P26010 798 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 ETV6P41212 452 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 ALDH9A1P49189 494 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 DGKGP49619 791 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 EIF2B2P49770 351 aaKnown RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 METAP1P53582 386 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 UGT2B15P54855 530 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 DHCR24Q15392 516 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 MAPK11Q15759 364 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 DUSP7Q16829 419 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 TPRG1LQ5T0D9 272 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 SLC44A2Q8IWA5 706 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-203ENST00000631321 DHRS1Q96LJ7 313 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 ZSWIM3Q96MP5 696 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 OR52A5Q9H2C5 316 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 MIEF1Q9NQG6 463 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 AHSPQ9NZD4 102 aa12.17□□□□□ -0.46
LINC00540-203ENST00000631321 HIDE1A8MVS5 230 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ADRA2AP08913 450 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ERGP11308 486 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ITGB8P26012 769 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 WEE1P30291 646 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 GPR1P46091 355 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 CRISP3P54108 245 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ERVFC1P60507 584 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ST8SIA6P61647 398 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 SNRPGP62308 76 aaKnown RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 GANABQ14697 944 aaKnown RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 STEAP3Q658P3 488 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 RAET1GQ6H3X3 334 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 FAM92BQ6ZTR7 304 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 C11orf96Q7Z7L8 435 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ATCAYQ86WG3 371 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ADGRF3Q8IZF5 1079 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 TMIEQ8NEW7 156 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ARRDC3Q96B67 414 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 CENPOQ9BU64 300 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 C6orf62Q9GZU0 229 aaPredicted RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 SLC25A19Q9HC21 320 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 POLE4Q9NR33 117 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 CLN6Q9NWW5 311 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 SLC27A6Q9Y2P4 619 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 PEX16Q9Y5Y5 336 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 PRRC2BQ5JSZ5 2229 aaKnown RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 LOC100506127A0A0U1RQW1 187 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 PLPP1O14494 284 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ZW10O43264 779 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 VEGFDO43915 354 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 CYP17A1P05093 508 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 C6P13671 934 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 POU2F1P14859 743 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 KELP23276 732 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 CNR2P34972 360 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 LIM2P55344 173 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 NFE2L1Q14494 772 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 TIMM50Q3ZCQ8 353 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 TMEM201Q5SNT2 666 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 DEPDC1Q5TB30 811 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 PLAG1Q6DJT9 500 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 CEACAM20Q6UY09 585 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 FAM83HQ6ZRV2 1179 aaPredicted RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 NCCRP1Q6ZVX7 275 aaPredicted RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 PTCHD4Q6ZW05 846 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 HORMAD2Q8N7B1 307 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 MRPL43Q8N983 215 aaKnown RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 FAM46DQ8NEK8 389 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 GPR32P1Q8NGA4 272 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 SLC38A5Q8WUX1 472 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 RAD51AP1Q96B01 352 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ZNF764Q96H86 408 aaPredicted RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 TAPBPLQ9BX59 468 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 SORBS1Q9BX66 1292 aaKnown RBP12.16□□□□□ -0.46
LINC00540-203ENST00000631321 PELI2Q9HAT8 420 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 SLAMF7Q9NQ25 335 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 PRDM8Q9NQV8 689 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 ABCB10Q9NRK6 738 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 REV1Q9UBZ9 1251 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 WDR37Q9Y2I8 494 aa12.16□□□□□ -0.46
LINC00540-203ENST00000631321 MN1Q10571 1320 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-203ENST00000631321 HOXC11O43248 304 aaPredicted RBP12.15□□□□□ -0.46
LINC00540-203ENST00000631321 MFN2O95140 757 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 SNX4O95219 450 aa12.15□□□□□ -0.46
LINC00540-203ENST00000631321 SERPINB1P30740 379 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms